RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 CSH1P0DML2 217 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 CSH2P0DML3 217 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 ATF6P18850 670 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 FCARP24071 287 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 ACAT1P24752 427 aaKnown RBP13.26□□□□□ -0.29
SS18-225ENST00000585121 HOXD11P31277 338 aaPredicted RBP13.26□□□□□ -0.29
SS18-225ENST00000585121 ATICP31939 592 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 BIRC3Q13489 604 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 GRM2Q14416 872 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 GPR158Q5T848 1215 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 ALYREFQ86V81 257 aaKnown RBP13.26□□□□□ -0.29
SS18-225ENST00000585121 OSTM1Q86WC4 334 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 CCDC105Q8IYK2 499 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 DNASE1L2Q92874 299 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 FUBP3Q96I24 572 aaKnown RBP eCLIP13.26□□□□□ -0.29
SS18-225ENST00000585121 ZNF334Q9HCZ1 680 aaPredicted RBP13.26□□□□□ -0.29
SS18-225ENST00000585121 GTF3C4Q9UKN8 822 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 CDH9Q9ULB4 789 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 MRPS17Q9Y2R5 130 aaKnown RBP13.26□□□□□ -0.29
SS18-225ENST00000585121 NOTCH4Q99466 2003 aa13.26□□□□□ -0.29
SS18-225ENST00000585121 KANSL1LA0AUZ9 987 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 HEPACAM2A8MVW5 462 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 NCAM2O15394 837 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 CST3P01034 146 aaPredicted RBP13.25□□□□□ -0.29
SS18-225ENST00000585121 NR3C1P04150 777 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 WARSP23381 471 aaKnown RBP13.25□□□□□ -0.29
SS18-225ENST00000585121 GDI1P31150 447 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 GNL1P36915 607 aaPredicted RBP13.25□□□□□ -0.29
SS18-225ENST00000585121 VIPR2P41587 438 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 DPYDQ12882 1025 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 WDR72Q3MJ13 1102 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 SCARA3Q6AZY7 606 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 POTEHQ6S545 545 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 GAREM2Q75VX8 874 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 MFSD6LQ8IWD5 586 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 PARD3BQ8TEW8 1205 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 TMEM174Q8WUU8 243 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 NELL2Q99435 816 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 SYT15Q9BQS2 421 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 KCTD10Q9H3F6 313 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 GOLPH3LQ9H4A5 285 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 TASP1Q9H6P5 420 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 TMLHEQ9NVH6 421 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 DMAC2Q9NW81 257 aa13.25□□□□□ -0.29
SS18-225ENST00000585121 MAGEC2Q9UBF1 373 aaPredicted RBP13.25□□□□□ -0.29
SS18-225ENST00000585121 UXTQ9UBK9 157 aaPredicted RBP13.25□□□□□ -0.29
SS18-225ENST00000585121 MAN2B1O00754 1011 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 NRG2O14511 850 aaPredicted RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 TACC1O75410 805 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 STAU1O95793 577 aaKnown RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 DCNP07585 359 aaKnown RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 PDGFRBP09619 1106 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 CYP2F1P24903 491 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 DDX6P26196 483 aaKnown RBP eCLIP13.24□□□□□ -0.29
SS18-225ENST00000585121 RPL13P26373 211 aaKnown RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 MRE11P49959 708 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 KCNB1Q14721 858 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 UBXN2BQ14CS0 331 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 CFAP221Q4G0U5 840 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 CEP135Q66GS9 1140 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 VITQ6UXI7 678 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 ZNF852Q6ZMS4 543 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 TPRG1Q6ZUI0 275 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 LIMS2Q7Z4I7 341 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 ARID3BQ8IVW6 561 aaPredicted RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 SCN4BQ8IWT1 228 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 PJA1Q8NG27 643 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 OR6B3Q8NGW1 331 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 BCO2Q9BYV7 579 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 OSBPL6Q9BZF3 934 aa13.24□□□□□ -0.29
SS18-225ENST00000585121 HOOK1Q9UJC3 728 aaKnown RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 MAGED2Q9UNF1 606 aaPredicted RBP13.24□□□□□ -0.29
SS18-225ENST00000585121 MYBPHLA2RUH7 354 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 FAM170BA6NMN3 283 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 LRRIQ3A6PVS8 624 aaPredicted RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 P4HA1P13674 534 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 CASP4P49662 377 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 MYL6P60660 151 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 CYP4F8P98187 520 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 NCOA4Q13772 614 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 DDR2Q16832 855 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 ZNF699Q32M78 642 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 FAM171BQ6P995 826 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 GUF1Q8N442 669 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 TMC2Q8TDI7 906 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 CSGALNACT1Q8TDX6 532 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 KBTBD7Q8WVZ9 684 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 ZNF516Q92618 1163 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 MRPS31Q92665 395 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 PKMYT1Q99640 499 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 DDX23Q9BUQ8 820 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 FOXQ1Q9C009 403 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 TRPV5Q9NQA5 729 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 HEBP1Q9NRV9 189 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 RMND1Q9NWS8 449 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 OBP2AQ9NY56 170 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 NXF1Q9UBU9 619 aaKnown RBP13.23□□□□□ -0.29
SS18-225ENST00000585121 TRAF3IP3Q9Y228 551 aa13.23□□□□□ -0.29
SS18-225ENST00000585121 KMT2EQ8IZD2 1858 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms