RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 ZFPL1O95159 310 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 CHEK2O96017 543 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 DHRS4L1P0CG22 281 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 GCSHP23434 173 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 ATICP31939 592 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 VIPR2P41587 438 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 RABGGTBP53611 331 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 AMOTQ4VCS5 1084 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 CACHD1Q5VU97 1274 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 PLAG1Q6DJT9 500 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 CCDC28AQ8IWP9 274 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 STT3BQ8TCJ2 826 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 NUP133Q8WUM0 1156 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 GCC1Q96CN9 775 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 UBA5Q9GZZ9 404 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 EPS8L2Q9H6S3 715 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 ZMYND8Q9ULU4 1186 aaPredicted RBP6.79□□□□□ -1.32
UBR1-208ENST00000569066 CD53P19397 219 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 RPS19P39019 145 aaKnown RBP6.79□□□□□ -1.32
UBR1-208ENST00000569066 MXRA7P84157 204 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 SLFN13Q68D06 897 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 Q6ZRM9 215 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 LIMS2Q7Z4I7 341 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 PLEKHH3Q7Z736 793 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 OR56A1Q8NGH5 318 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 FAM71BQ8TC56 605 aa6.79□□□□□ -1.32
UBR1-208ENST00000569066 LTV1Q96GA3 475 aaPredicted RBP6.79□□□□□ -1.32
UBR1-208ENST00000569066 DNMT3BQ9UBC3 853 aaKnown RBP6.79□□□□□ -1.32
UBR1-208ENST00000569066 HNRNPDLO14979 420 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 IPO13O94829 963 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 LMNAP02545 664 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 PYGLP06737 847 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 EGR1P18146 543 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 MST1P26927 711 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 COPAP53621 1224 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 KRT17Q04695 432 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 IQCB1Q15051 598 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 PTCHD3Q3KNS1 767 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 GAS2L3Q86XJ1 694 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 SDR16C5Q8N3Y7 309 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 PNISRQ8TF01 805 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 TRIM63Q969Q1 353 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 SMOQ99835 787 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 MLXIPQ9HAP2 919 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 CTTNBP2NLQ9P2B4 639 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 ZFR2Q9UPR6 939 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 ZNF536O15090 1300 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 GPR42O15529 346 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 TPH1P17752 444 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 PPFIA1Q13136 1202 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 ARHGEF7Q14155 803 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 ALFQ53S48 1182 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 AGAP9Q5VTM2 703 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 CCDC150Q8NCX0 1101 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 IPCEF1Q8WWN9 437 aaPredicted RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 NAP1L4Q99733 375 aaKnown RBP6.78□□□□□ -1.32
UBR1-208ENST00000569066 SIK2Q9H0K1 926 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 NECTIN3Q9NQS3 549 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 TM7SF3Q9NS93 570 aa6.78□□□□□ -1.32
UBR1-208ENST00000569066 MFAP3LO75121 409 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 SUN1O94901 812 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 RASAL1O95294 804 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 ELANEP08246 267 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 CCT5P48643 541 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 PXNP49023 591 aaPredicted RBP6.77□□□□□ -1.33
UBR1-208ENST00000569066 OCA2Q04671 838 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 PTK2BQ14289 1009 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 TMEM108Q6UXF1 575 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 KRT28Q7Z3Y7 464 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 POU5F2Q8N7G0 328 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 TRAPPC12Q8WVT3 735 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 SNX27Q96L92 541 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 PAGR1Q9BTK6 254 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 CXorf36Q9H7Y0 433 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 DKK4Q9UBT3 224 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 CDY1Q9Y6F8 540 aa6.77□□□□□ -1.33
UBR1-208ENST00000569066 SPATA31D3P0C874 917 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 MGAT1P26572 445 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 PNLIPRP1P54315 467 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 RNASE9P60153 205 aaKnown RBP6.76□□□□□ -1.33
UBR1-208ENST00000569066 TBC1D10BQ4KMP7 808 aaPredicted RBP6.76□□□□□ -1.33
UBR1-208ENST00000569066 ZFYVE27Q5T4F4 411 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 SPATA31D4Q6ZUB0 917 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 RHOT2Q8IXI1 618 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.76□□□□□ -1.33
UBR1-208ENST00000569066 BPIFB1Q8TDL5 484 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 TMEM171Q8WVE6 324 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 KATNAL1Q9BW62 490 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 PAXBP1Q9Y5B6 917 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 EIF3FO00303 357 aaPredicted RBP6.76□□□□□ -1.33
UBR1-208ENST00000569066 KCNQ3O43525 872 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 RAD17O75943 681 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 ARP10275 920 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 FGFR4P22455 802 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 YY1P25490 414 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 NTSR1P30989 418 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 GCLCP48506 637 aaPredicted RBP6.76□□□□□ -1.33
UBR1-208ENST00000569066 PKN1Q16512 942 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 SLC4A8Q2Y0W8 1093 aa6.76□□□□□ -1.33
UBR1-208ENST00000569066 CLASRPQ8N2M8 674 aaKnown RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms