RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PTPRZ1P23471 2315 aaPredicted RBP17.53■□□□□ 0.4
VPS29-207ENST00000549970 NUP210Q8TEM1 1887 aaPredicted RBP17.53■□□□□ 0.4
VPS29-207ENST00000549970 PVALEFA0A1B0GWK0 134 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 SHISA7A6NL88 538 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 DPYSL4O14531 572 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 NCAM2O15394 837 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 HCRTO43612 131 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 SP9P0CG40 484 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 TNNI1P19237 187 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 CCDC142Q17RM4 750 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 SOWAHAQ2M3V2 549 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 SDHAF4Q5VUM1 108 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 XXYLT1Q8NBI6 393 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 LEO1Q8WVC0 666 aaPredicted RBP17.53■□□□□ 0.4
VPS29-207ENST00000549970 CCDC127Q96BQ5 260 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 FNBP1Q96RU3 617 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 GTF3C4Q9UKN8 822 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 PIAS3Q9Y6X2 628 aa17.53■□□□□ 0.4
VPS29-207ENST00000549970 PATJQ8NI35 1801 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 RIF1Q5UIP0 2472 aaKnown RBP17.52■□□□□ 0.4
VPS29-207ENST00000549970 A0A1B0GVL5 298 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 MAN2B1O00754 1011 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 LAMTOR5O43504 91 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 ACTN4O43707 911 aaKnown RBP17.52■□□□□ 0.4
VPS29-207ENST00000549970 PRAMEF12O95522 483 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 SLFN14P0C7P3 912 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 CYP2F1P24903 491 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 PCSK1P29120 753 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 MAGEA9P43362 315 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 LHX1P48742 406 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 SNRPFP62306 86 aaKnown RBP17.52■□□□□ 0.4
VPS29-207ENST00000549970 CYP24A1Q07973 514 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 FCHO2Q0JRZ9 810 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 BMT2Q1RMZ1 405 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 TRAPPC11Q7Z392 1133 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 MAML2Q8IZL2 1156 aaPredicted RBP17.52■□□□□ 0.4
VPS29-207ENST00000549970 SPATA18Q8TC71 538 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 CSGALNACT1Q8TDX6 532 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 PAGE5Q96GU1 130 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 LRRC3BQ96PB8 259 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 TASP1Q9H6P5 420 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 TRPV5Q9NQA5 729 aa17.52■□□□□ 0.4
VPS29-207ENST00000549970 MAGED2Q9UNF1 606 aaPredicted RBP17.52■□□□□ 0.4
VPS29-207ENST00000549970 ARNTLO00327 626 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 GABRDO14764 452 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 CHADO15335 359 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 PFKFB1P16118 471 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 HMGA1P17096 107 aaKnown RBP17.51■□□□□ 0.39
VPS29-207ENST00000549970 KRT85P78386 507 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 PSMD6Q15008 389 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 DDR2Q16832 855 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 KNOP1Q1ED39 458 aaKnown RBP17.51■□□□□ 0.39
VPS29-207ENST00000549970 SPATA2LQ8IUW3 424 aaPredicted RBP17.51■□□□□ 0.39
VPS29-207ENST00000549970 FAM3CQ92520 227 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 CLDN23Q96B33 292 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 ZFYVE19Q96K21 471 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 SPATA32Q96LK8 384 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 MMS19Q96T76 1030 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 PKMYT1Q99640 499 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 CGRRF1Q99675 332 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 SMG9Q9H0W8 520 aaKnown RBP17.51■□□□□ 0.39
VPS29-207ENST00000549970 EXOC1Q9NV70 894 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 ZDHHC9Q9Y397 364 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 FAM186AA6NE01 2351 aa17.51■□□□□ 0.39
VPS29-207ENST00000549970 MYBPHLA2RUH7 354 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 KLRC4O43908 158 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 ATP2C2O75185 946 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 CSH1P0DML2 217 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 CSH2P0DML3 217 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 CMA1P23946 247 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 CCNE1P24864 410 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 LMO2P25791 158 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 RPS9P46781 194 aaKnown RBP17.5■□□□□ 0.39
VPS29-207ENST00000549970 NLRP12P59046 1061 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 PSMC1P62191 440 aaKnown RBP17.5■□□□□ 0.39
VPS29-207ENST00000549970 RPL10AP62906 217 aaKnown RBP17.5■□□□□ 0.39
VPS29-207ENST00000549970 STK4Q13043 487 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 FZD5Q13467 585 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 ZC3H14Q6PJT7 736 aaKnown RBP17.5■□□□□ 0.39
VPS29-207ENST00000549970 DPH6Q7L8W6 267 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 TMEM150AQ86TG1 271 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 SCN4BQ8IWT1 228 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 TTC8Q8TAM2 541 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 KBTBD7Q8WVZ9 684 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 SYT15Q9BQS2 421 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 SLC46A2Q9BY10 475 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 ABCB6Q9NP58 842 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 OBP2AQ9NY56 170 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 CGNQ9P2M7 1197 aaKnown RBP17.5■□□□□ 0.39
VPS29-207ENST00000549970 DENND4CQ5VZ89 1909 aa17.5■□□□□ 0.39
VPS29-207ENST00000549970 SLC38A8A6NNN8 435 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 EXOC3O60645 756 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 CST3P01034 146 aaPredicted RBP17.49■□□□□ 0.39
VPS29-207ENST00000549970 F11P03951 625 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 SOX9P48436 509 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 KPNA1P52294 538 aaPredicted RBP17.49■□□□□ 0.39
VPS29-207ENST00000549970 CSTF1Q05048 431 aaKnown RBP17.49■□□□□ 0.39
VPS29-207ENST00000549970 KMT5BQ4FZB7 885 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 ARHGAP29Q52LW3 1261 aa17.49■□□□□ 0.39
VPS29-207ENST00000549970 LIMS2Q7Z4I7 341 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms