RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ATP2B1P20020 1258 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 HSPA4P34932 840 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 DPP6P42658 865 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 RPL6Q02878 288 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 SPDYCQ5MJ68 293 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 Q6ZUG5 572 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 TXNDC5Q8NBS9 432 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 LSM14AQ8ND56 463 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 EXOC4Q96A65 974 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 ESYT1Q9BSJ8 1104 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 LINC00597Q9H2U6 94 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 TOPORSQ9NS56 1045 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 TOR4AQ9NXH8 423 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 KIAA1522Q9P206 1035 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 PCOLCE2Q9UKZ9 415 aa16.77■□□□□ 0.28
CLSTN3-216ENST00000545663 PTPRQQ9UMZ3 2332 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 OR6C75A6NL08 312 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 GOLGA8CPA6NN73 597 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 OPRD1P41143 372 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 CCT2P78371 535 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 MESP2Q0VG99 397 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 MTF1Q14872 753 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 EML3Q32P44 896 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 EMC10Q5UCC4 262 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 KRT25Q7Z3Z0 450 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 NEK8Q86SG6 692 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 GLRX5Q86SX6 157 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 PGBD3Q8N328 593 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 STKLD1Q8NE28 680 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 FCRL3Q96P31 734 aaPredicted RBP16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 PNMA5Q96PV4 448 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 CNTN3Q9P232 1028 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 KCNJ14Q9UNX9 436 aa16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 HELZP42694 1942 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-216ENST00000545663 KLF8O95600 359 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 F11P03951 625 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 SYPP08247 313 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 CHRM1P11229 460 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 NLRP12P59046 1061 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 ZNF33AQ06730 810 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 SPAG1Q07617 926 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 SRSF1Q07955 248 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 MGAT5BQ3V5L5 792 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 LMBRD2Q68DH5 695 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 USP37Q86T82 979 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 SLC41A1Q8IVJ1 513 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 IL17RCQ8NAC3 791 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 MCPH1Q8NEM0 835 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 SETD7Q8WTS6 366 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 OSCP1Q8WVF1 389 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 CYP2S1Q96SQ9 504 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 TNFSF13BQ9Y275 285 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 NID2Q14112 1375 aa16.75■□□□□ 0.27
CLSTN3-216ENST00000545663 AP5Z1O43299 807 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 TIE1P35590 1138 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 EIF2S3P41091 472 aaKnown RBP16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 NAMPTP43490 491 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 KCNC4Q03721 635 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 VEPH1Q14D04 833 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 TAF12Q16514 161 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 PLEKHG6Q3KR16 790 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 SEZ6Q53EL9 994 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 EFCAB13Q8IY85 973 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 ACAP3Q96P50 834 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 SLC22A12Q96S37 553 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 KIF9Q9HAQ2 790 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 PRDM16Q9HAZ2 1276 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 IL21RQ9HBE5 538 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 PTPRHQ9HD43 1115 aa16.74■□□□□ 0.27
CLSTN3-216ENST00000545663 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 TCRBV21S2A2A0A5A6 115 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 CAPN9O14815 690 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 ADAM23O75077 832 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 GCFC2P16383 781 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 HMGA1P17096 107 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 IFNAR2P48551 515 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 DMP1Q13316 513 aaPredicted RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 MYBPC2Q14324 1141 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 GAB4Q2WGN9 574 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 ZNF568Q3ZCX4 644 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 SLC39A12Q504Y0 691 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 EARS2Q5JPH6 523 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 RNF20Q5VTR2 975 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 OVOS1Q6IE37 1185 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 MON1AQ86VX9 555 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 OR10T2Q8NGX3 314 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 CCDC26Q8TAB7 109 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 ATP2A3Q93084 1043 aa16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 ACO2Q99798 780 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-216ENST00000545663 FAM205CA6NFA0 338 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 DKK1O94907 266 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 HARSP12081 509 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 SLC6A11P48066 632 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 MRPS21P82921 87 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 ZNF77Q15935 545 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 SLC10A6Q3KNW5 377 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 DSTYKQ6XUX3 929 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 SLFN12Q8IYM2 578 aa16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 PDCD7Q8N8D1 485 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-216ENST00000545663 NACC1Q96RE7 527 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms