RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 TRIM31Q9BZY9 425 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 CARD9Q9H257 536 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 TRMT13Q9NUP7 481 aaKnown RBP15.17■□□□□ 0.02
VPS33A-209ENST00000544349 NFS1Q9Y697 457 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 GPR182O15218 404 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 LSM8O95777 96 aaKnown RBP15.17■□□□□ 0.02
VPS33A-209ENST00000544349 PTP4A2Q12974 167 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 C9orf57Q5W0N0 161 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 LRRC52Q8N7C0 313 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 EIF1ADQ8N9N8 165 aaKnown RBP15.17■□□□□ 0.02
VPS33A-209ENST00000544349 SLC4A11Q8NBS3 891 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 SEC14L1Q92503 715 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 TMEM176AQ96HP8 235 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 GLT1D1Q96MS3 346 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 TWNKQ96RR1 684 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 TSEN34Q9BSV6 310 aaKnown RBP15.17■□□□□ 0.02
VPS33A-209ENST00000544349 AGO3Q9H9G7 860 aaKnown RBP15.17■□□□□ 0.02
VPS33A-209ENST00000544349 ADAM22Q9P0K1 906 aa15.17■□□□□ 0.02
VPS33A-209ENST00000544349 TLR3O15455 904 aaKnown RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 XPOTO43592 962 aaKnown RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 CD4P01730 458 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 CD19P15391 556 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 CDH5P33151 784 aaPredicted RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 C1QBPQ07021 282 aaKnown RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 INCA1Q0VD86 236 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 MESDQ14696 234 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 C2CD6Q53TS8 623 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 LIN9Q5TKA1 542 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 KDM7AQ6ZMT4 941 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 ZDHHC14Q8IZN3 488 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 TTC39CQ8N584 583 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 TMEM35BQ8NCS4 154 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 BTBD6Q96KE9 485 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 ATP6V1G3Q96LB4 118 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 RPS6KC1Q96S38 1066 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 C11orf70Q9BRQ4 267 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 OSBPL7Q9BZF2 842 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 ZNF518BQ9C0D4 1074 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 ELOVL4Q9GZR5 314 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 FAM105AQ9NUU6 356 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 HMGXB4Q9UGU5 601 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 BARX2Q9UMQ3 279 aaPredicted RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 NOD1Q9Y239 953 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 CENPFP49454 3210 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 FRMPD3Q5JV73 1810 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 PIRO00625 290 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 MED7O43513 233 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 MMP8P22894 467 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 CCT5P48643 541 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 ZNF844Q08AG5 666 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 TRIM71Q2Q1W2 868 aaKnown RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 FBXO47Q5MNV8 452 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 MMS22LQ6ZRQ5 1243 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 TMC3Q7Z5M5 1100 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 WDTC1Q8N5D0 677 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 TMBIM4Q9HC24 238 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 FEZ2Q9UHY8 353 aaPredicted RBP15.16■□□□□ 0.02
VPS33A-209ENST00000544349 PTCH2Q9Y6C5 1203 aa15.16■□□□□ 0.02
VPS33A-209ENST00000544349 NR1D1P20393 614 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 CYP3A5P20815 502 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 COMTP21964 271 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 GUCY1A3Q02108 690 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 PPARDQ03181 441 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 ORC1Q13415 861 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 FAM26DQ5JW98 314 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 PHLDB2Q86SQ0 1253 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 C1orf131Q8NDD1 294 aaKnown RBP15.15■□□□□ 0.02
VPS33A-209ENST00000544349 LHX5Q9H2C1 402 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 PADI3Q9ULW8 664 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 SNX9Q9Y5X1 595 aa15.15■□□□□ 0.02
VPS33A-209ENST00000544349 MYO1FO00160 1098 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 GHRP10912 638 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 ATF7P17544 494 aaPredicted RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 CD52P31358 61 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 NDST1P52848 882 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 SOX4Q06945 474 aaPredicted RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 LLGL2Q6P1M3 1020 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 C10orf67Q8IYJ2 551 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 CCDC26Q8TAB7 109 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 ANAPC7Q9UJX3 599 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 TRIM17Q9Y577 477 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 CEP83Q9Y592 693 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 MIF4GDA9UHW6 222 aaKnown RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 PTGESO14684 152 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 VDRP11473 427 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 CTNNA1P35221 906 aaKnown RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 DR1Q01658 176 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 PLEKHA7Q6IQ23 1121 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 DENND1BQ6P3S1 775 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 LRIG3Q6UXM1 1119 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 HACE1Q8IYU2 909 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 BCAS4Q8TDM0 211 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 UBLCP1Q8WVY7 318 aaPredicted RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 C18orf8Q96DM3 657 aa15.14■□□□□ 0.01
VPS33A-209ENST00000544349 MRPL47Q9HD33 250 aaKnown RBP15.14■□□□□ 0.01
VPS33A-209ENST00000544349 A0A1W2PQ45 241 aaPredicted RBP15.13■□□□□ 0.01
VPS33A-209ENST00000544349 A0A1W2PQY0 241 aa15.13■□□□□ 0.01
VPS33A-209ENST00000544349 TCRBV7S2A1N4TA0A589 114 aa15.13■□□□□ 0.01
VPS33A-209ENST00000544349 MEIS3P2A8K0S8 358 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms