RNA–Protein interactions for RNA: ENST00000542680.1

CACNA1C-IT3-201, CACNA1C intronic transcript 3, humanhuman

TSL 3 BASIC

Gene CACNA1C-IT3, Length 622 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-IT3-201ENST00000542680 CISHQ9NSE2 258 aa13.13□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 NXF1Q9UBU9 619 aaKnown RBP13.13□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 FOXN3O00409 490 aaPredicted RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PAEPP09466 180 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CYLC1P35663 651 aaPredicted RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PDE6CP51160 858 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CLCNKBP51801 687 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 AFF1P51825 1210 aaKnown RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ZNF132P52740 706 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 RNASELQ05823 741 aaKnown RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 GOLGA8FQ08AF8 430 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 GOLGA8DPQ0D2H9 430 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KLHL30Q0D2K2 578 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 E4F1Q66K89 784 aaPredicted RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 UNC93AQ86WB7 457 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 COLGALT2Q8IYK4 626 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CMTR2Q8IYT2 770 aaKnown RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TMEM86AQ8N2M4 240 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KAT5Q92993 513 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ARID3AQ99856 593 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 RC3H2Q9HBD1 1191 aaKnown RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 GOLGA2P5Q9HBQ8 144 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 BARX2Q9UMQ3 279 aaPredicted RBP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SPEGQ15772 3267 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ATP8B3O60423 1300 aa13.12□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PPEF2O14830 753 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TRAPPC3O43617 180 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 NCK2O43639 380 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 HUS1O60921 280 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CILPO75339 1184 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 IPO7O95373 1038 aaKnown RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 HOXB3P14651 431 aaPredicted RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PTK2Q05397 1052 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 BMS1Q14692 1282 aaKnown RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TDRD12Q587J7 1177 aaKnown RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 APPL2Q8NEU8 664 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 EPS8L1Q8TE68 723 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ZNF689Q96CS4 500 aaPredicted RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CCDC42Q96M95 316 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 NHEJ1Q9H9Q4 299 aaPredicted RBP13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ARHGAP20Q9P2F6 1191 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 DSEQ9UL01 958 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ZKSCAN5Q9Y2L8 839 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PCDHB4Q9Y5E5 795 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SNX9Q9Y5X1 595 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CEP295Q9C0D2 2601 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 UNC79Q9P2D8 2635 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TSC2P49815 1807 aa13.11□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 FRYQ5TBA9 3013 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CASTOR2A6NHX0 329 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TBKBP1A7MCY6 615 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 EIF3CLB5ME19 914 aaKnown RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 RBAK-RBAKDNI3L0D1 243 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 M0QZQ0 153 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CCP110O43303 1012 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TBX10O75333 385 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 B3GAT3O94766 335 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 LCA5LO95447 670 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ODC1P11926 461 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KRT5P13647 590 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TYMPP19971 482 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 IBSPP21815 317 aaPredicted RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ELAVL2Q12926 359 aaKnown RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 STILQ15468 1287 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 ASTE1Q2TB18 679 aaPredicted RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SCARA3Q6AZY7 606 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 PPP1R2P3Q6NXS1 205 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TMEM270Q6UE05 265 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KIAA2013Q8IYS2 634 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TXLNBQ8N3L3 684 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 TMEM105Q8N8V8 129 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 RBBP8NLQ8NC74 664 aaPredicted RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SUSD3Q96L08 255 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 MMS19Q96T76 1030 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 EIF3CQ99613 913 aaKnown RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SYT11Q9BT88 431 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 COLEC11Q9BWP8 271 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 DEF6Q9H4E7 631 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 HAUS4Q9H6D7 363 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SMYD3Q9H7B4 428 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 LUC7LQ9NQ29 371 aaKnown RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KCND1Q9NSA2 647 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 KIAA1257Q9ULG3 409 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 POLIQ9UNA4 740 aa13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 EPN1Q9Y6I3 576 aaPredicted RBP13.1□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SOWAHDA6NJG2 315 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 H3BNC9 293 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CYB561D2O14569 222 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 SPTLC1O15269 473 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CYP26A1O43174 497 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 DDHD2O94830 711 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 NDUFA10O95299 355 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CYP11A1P05108 521 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CYP11B1P15538 503 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 CLCN1P35523 988 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 USP8P40818 1118 aa13.09□□□□□ -0.31
CACNA1C-IT3-201ENST00000542680 LHX1P48742 406 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms