RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 BPIFB4P59827 614 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 CCZ1BP86790 482 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 CCZ1P86791 482 aaPredicted RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 GRIK3Q13003 919 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SPA17Q15506 151 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 TCTN1Q2MV58 587 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SV2CQ496J9 727 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 NOMO2Q5JPE7 1267 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 TMEM240Q5SV17 173 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 C9orf57Q5W0N0 161 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SCARA3Q6AZY7 606 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 DPY19L2P1Q6NXN4 242 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 WDR59Q6PJI9 974 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SCARA5Q6ZMJ2 495 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 VPS36Q86VN1 386 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 TMEM130Q8N3G9 435 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 LRRC52Q8N7C0 313 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 LINC01599Q8WXQ3 324 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 GTPBP3Q969Y2 492 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 JAKMIP2Q96AA8 810 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 ZNF560Q96MR9 790 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 KREMEN1Q96MU8 473 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 PPP1R10Q96QC0 940 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 CHP1Q99653 195 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 GDF15Q99988 308 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 DNAI2Q9GZS0 605 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 XYLT2Q9H1B5 865 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 PDCL3Q9H2J4 239 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 KCNF1Q9H3M0 494 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 GOLGA2P5Q9HBQ8 144 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 APOBEC3GQ9HC16 384 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SEPT11Q9NVA2 429 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 MIOSQ9NXC5 875 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 AIPL1Q9NZN9 384 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 PUF60Q9UHX1 559 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 AJAP1Q9UKB5 411 aaPredicted RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 POLIQ9UNA4 740 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SNX9Q9Y5X1 595 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 ABHD14A-ACY1A0A1B0GW23 586 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 ANO9A1A5B4 782 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CASTOR2A6NHX0 329 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 SOWAHDA6NJG2 315 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 KPNA7A9QM74 516 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 PODXLO00592 558 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 PIRO00625 290 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 PPEF2O14830 753 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CYP26A1O43174 497 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 HUS1O60921 280 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 AMHP03971 560 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 MX2P20592 715 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TNFAIP3P21580 790 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 HNRNPH3P31942 346 aaKnown RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 BMP8BP34820 402 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 EIF4A3P38919 411 aaKnown RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 RAP1GAPP47736 663 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 KCNJ6P48051 423 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TAF6P49848 677 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CDK17Q00537 523 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 SOX4Q06945 474 aaPredicted RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TUSC3Q13454 348 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 SHHQ15465 462 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 MEA1Q16626 185 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CLLU1OSQ5K130 101 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 C9orf50Q5SZB4 431 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 DCLRE1AQ6PJP8 1040 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TMEM270Q6UE05 265 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 DSTYKQ6XUX3 929 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 IRF2BP2Q7Z5L9 587 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 NPAS4Q8IUM7 802 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 FAM71AQ8IYT1 594 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CCDC170Q8IYT3 715 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 GSTCDQ8NEC7 633 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 HERVK_113Q902F9 699 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 SHC3Q92529 594 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 RABGGTAQ92696 567 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 UROC1Q96N76 676 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 ARID3AQ99856 593 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 SNX25Q9H3E2 840 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 HAUS4Q9H6D7 363 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 NHEJ1Q9H9Q4 299 aaPredicted RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CYP3A43Q9HB55 503 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 CISHQ9NSE2 258 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TBC1D13Q9NVG8 400 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 PYCARDQ9ULZ3 195 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 ZKSCAN5Q9Y2L8 839 aa7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 EPN1Q9Y6I3 576 aaPredicted RBP7.09□□□□□ -1.27
CLTCL1-206ENST00000540896 TRIOBPQ9H2D6 2365 aa7.09□□□□□ -1.28
CLTCL1-206ENST00000540896 TET1Q8NFU7 2136 aa7.09□□□□□ -1.28
CLTCL1-206ENST00000540896 TBKBP1A7MCY6 615 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 CYB561D2O14569 222 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 CCP110O43303 1012 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 ZSCAN12O43309 604 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 B3GAT3O94766 335 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 BAIAP3O94812 1187 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 NDUFA10O95299 355 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 ALDH2P05091 517 aa7.08□□□□□ -1.28
CLTCL1-206ENST00000540896 PLEKP08567 350 aaPredicted RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms