RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 CYP2F1P24903 491 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 NDUFA8P51970 172 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 PSMC1P62191 440 aaKnown RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 SMARCB1Q12824 385 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 STK4Q13043 487 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 TRPC3Q13507 836 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 BECN1Q14457 450 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 PSMD6Q15008 389 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 NFE2Q16621 373 aaPredicted RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 BMT2Q1RMZ1 405 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 INTS6LQ5JSJ4 861 aaKnown RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 GAREM2Q75VX8 874 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 TRAPPC11Q7Z392 1133 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 FRMD5Q7Z6J6 570 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 SPATA2LQ8IUW3 424 aaPredicted RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 ARID3BQ8IVW6 561 aaPredicted RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 TOP6BLQ8N6T0 577 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 KIAA0895Q8NCT3 520 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 CXorf38Q8TB03 319 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 CCDC47Q96A33 483 aaKnown RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 MMS19Q96T76 1030 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 CGRRF1Q99675 332 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 ACBD6Q9BR61 282 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 GDAP2Q9NXN4 497 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 HSFX1Q9UBD0 423 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 USP25Q9UHP3 1055 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 GTF3C4Q9UKN8 822 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 NDRG2Q9UN36 371 aaKnown RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 MTF2Q9Y483 593 aaPredicted RBP11.2□□□□□ -0.62
CAPN1-225ENST00000533704 FAM186AA6NE01 2351 aa11.2□□□□□ -0.62
CAPN1-225ENST00000533704 NCANO14594 1321 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 MYBPHLA2RUH7 354 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 GFRA3O60609 400 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 ATP2C2O75185 946 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 PDGFRBP09619 1106 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 PCSK1P29120 753 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 CDC25CP30307 473 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 LHX1P48742 406 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 CASP4P49662 377 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SNRPFP62306 86 aaKnown RBP11.19□□□□□ -0.62
CAPN1-225ENST00000533704 BIRC3Q13489 604 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 DDR2Q16832 855 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SOWAHAQ2M3V2 549 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 ZNF852Q6ZMS4 543 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SCN4BQ8IWT1 228 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 GOLGA5Q8TBA6 731 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 CSGALNACT1Q8TDX6 532 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 DEPDC1BQ8WUY9 529 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 DNASE1L2Q92874 299 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 IRF7Q92985 503 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 RSPRY1Q96DX4 576 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SYT15Q9BQS2 421 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 BCO2Q9BYV7 579 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SCAND2PQ9GZW5 306 aaPredicted RBP11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SMG9Q9H0W8 520 aaKnown RBP11.19□□□□□ -0.62
CAPN1-225ENST00000533704 LTB4R2Q9NPC1 389 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 SPATA6Q9NWH7 488 aaPredicted RBP11.19□□□□□ -0.62
CAPN1-225ENST00000533704 CGNQ9P2M7 1197 aaKnown RBP11.19□□□□□ -0.62
CAPN1-225ENST00000533704 HPSEQ9Y251 543 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 FANCMQ8IYD8 2048 aa11.19□□□□□ -0.62
CAPN1-225ENST00000533704 HELZP42694 1942 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 CST3P01034 146 aaPredicted RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 RPN1P04843 607 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 GLULP15104 373 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 LMO2P25791 158 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TARSP26639 723 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 RPL10AP62906 217 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TNNC1P63316 161 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 CYP27A1Q02318 531 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 PSMD2Q13200 908 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 CEP135Q66GS9 1140 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 MFSD6LQ8IWD5 586 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 C12orf56Q8IXR9 622 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TTC16Q8NEE8 873 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 OR6B3Q8NGW1 331 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TTC8Q8TAM2 541 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 KBTBD7Q8WVZ9 684 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 MYLPFQ96A32 169 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 E2F7Q96AV8 911 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 ZFYVE19Q96K21 471 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 MRPL45Q9BRJ2 306 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 DDX23Q9BUQ8 820 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 SNX25Q9H3E2 840 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 GOLPH3LQ9H4A5 285 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TASP1Q9H6P5 420 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 TRPV4Q9HBA0 871 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 IL21Q9HBE4 155 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 NXF1Q9UBU9 619 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 MRPS17Q9Y2R5 130 aaKnown RBP11.18□□□□□ -0.62
CAPN1-225ENST00000533704 PIAS3Q9Y6X2 628 aa11.18□□□□□ -0.62
CAPN1-225ENST00000533704 SLC38A8A6NNN8 435 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 GABRDO14764 452 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 NCAM2O15394 837 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 PRAMEF12O95522 483 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 NR3C1P04150 777 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 CSH1P0DML2 217 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 CSH2P0DML3 217 aa11.17□□□□□ -0.62
CAPN1-225ENST00000533704 HMGA1P17096 107 aaKnown RBP11.17□□□□□ -0.62
CAPN1-225ENST00000533704 KPNA1P52294 538 aaPredicted RBP11.17□□□□□ -0.62
CAPN1-225ENST00000533704 NLRP12P59046 1061 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms