RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SLC5A9Q2M3M2 681 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 PPM1JQ5JR12 505 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 ANKS3Q6ZW76 656 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 UNC13DQ70J99 1090 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 ZBTB8OSQ8IWT0 167 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 UROC1Q96N76 676 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 NAPGQ99747 312 aaPredicted RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 FUT8Q9BYC5 575 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 GTPBP4Q9BZE4 634 aaKnown RBP8.86□□□□□ -0.99
NEDD8-207ENST00000533242 UBXN6Q9BZV1 441 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 C2orf40Q9H1Z8 148 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 TRPV5Q9NQA5 729 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 SNTG2Q9NY99 539 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 SIK3Q9Y2K2 1263 aa8.86□□□□□ -0.99
NEDD8-207ENST00000533242 NCOR2Q9Y618 2525 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 GREB1Q4ZG55 1949 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 LRRIQ4A6NIV6 560 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 E9PMD0 336 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 RHOXF2BP0C7M4 288 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 APBA1Q02410 837 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 RAD51AP2Q09MP3 1159 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 PRSS36Q5K4E3 855 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CNNM4Q6P4Q7 775 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ERGIC2Q96RQ1 377 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 RHOXF2Q9BQY4 288 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 BRD9Q9H8M2 597 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 NHEJ1Q9H9Q4 299 aaPredicted RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ZFP14Q9HCL3 533 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 FAM207AQ9NSI2 230 aaPredicted RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 TBC1D7Q9P0N9 293 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 STK17AQ9UEE5 414 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 NDRG2Q9UN36 371 aaKnown RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CDY1Q9Y6F8 540 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 BICDL2A1A5D9 508 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ZNF197O14709 1029 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 FOXD2O60548 495 aaPredicted RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 LRG1P02750 347 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 GABPB1Q06547 395 aaPredicted RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 PDIA5Q14554 519 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CSRP2Q16527 193 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 COBLL1Q53SF7 1204 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CCDC122Q5T0U0 273 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 POTEHQ6S545 545 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CD300LGQ6UXG3 332 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 MCPH1Q8NEM0 835 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 FAM3CQ92520 227 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 IRF7Q92985 503 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 DDX27Q96GQ7 796 aaKnown RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ADPGKQ9BRR6 497 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 TRMT61BQ9BVS5 477 aaKnown RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 CXCL16Q9H2A7 254 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 LMAN1LQ9HAT1 526 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ARGLU1Q9NWB6 273 aaPredicted RBP8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ARHGAP20Q9P2F6 1191 aa8.85□□□□□ -0.99
NEDD8-207ENST00000533242 ZNF185O15231 689 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 TRAPPC3O43617 180 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 USO1O60763 962 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 TKTP29401 623 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 VSNL1P62760 191 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 ZBED6P86452 979 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 AMPD3Q01432 767 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 ORC2Q13416 577 aaPredicted RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 PRPF4BQ13523 1007 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 GRM2Q14416 872 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 LONRF2Q1L5Z9 754 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 TMEM132AQ24JP5 1023 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 DCAF4L1Q3SXM0 396 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 ZCWPW2Q504Y3 356 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 FAM78AQ5JUQ0 283 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 PRR23CQ6ZRP0 262 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 TRAPPC11Q7Z392 1133 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 MAP4K3Q8IVH8 894 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 ZNF461Q8TAF7 563 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 NOC3LQ8WTT2 800 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 DDX1Q92499 740 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 CDK5RAP3Q96JB5 506 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 PCMTD1Q96MG8 357 aaPredicted RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 PPP1R10Q96QC0 940 aaKnown RBP8.84□□□□□ -0.99
NEDD8-207ENST00000533242 NDST4Q9H3R1 872 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 MYO6Q9UM54 1294 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 PCDHA12Q9UN75 941 aa8.84□□□□□ -0.99
NEDD8-207ENST00000533242 GPR179Q6PRD1 2367 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.83□□□□□ -1
NEDD8-207ENST00000533242 PVALEFA0A1B0GWK0 134 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 WDR27A2RRH5 827 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 TTLL13PA6NNM8 815 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 H3BQF6 201 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 POLR3GO15318 223 aaPredicted RBP8.83□□□□□ -1
NEDD8-207ENST00000533242 ABLIM3O94929 683 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 PRKCBP05771 671 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 ELF1P32519 619 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 CNR2P34972 360 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 GYS2P54840 703 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 MLLT6P55198 1093 aaPredicted RBP8.83□□□□□ -1
NEDD8-207ENST00000533242 SIM2Q14190 667 aaPredicted RBP8.83□□□□□ -1
NEDD8-207ENST00000533242 LPAL2Q16609 132 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 MAPK6Q16659 721 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 VWA3BQ502W6 1294 aa8.83□□□□□ -1
NEDD8-207ENST00000533242 BEND6Q5SZJ8 279 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms