RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PTP4A2Q12974 167 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 GOLGA7BQ2TAP0 167 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 MFSD5Q6N075 450 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.28■■□□□ 1.16
VPS28-208ENST00000527797 LRRC57Q8N9N7 239 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 MSANTD4Q8NCY6 345 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 HASPINQ8TF76 798 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 FAM49BQ9NUQ9 324 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 DDX43Q9NXZ2 648 aaKnown RBP22.28■■□□□ 1.16
VPS28-208ENST00000527797 HESX1Q9UBX0 185 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 TIMM13Q9Y5L4 95 aaPredicted RBP22.28■■□□□ 1.16
VPS28-208ENST00000527797 TBKBP1A7MCY6 615 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 TMEM189-UBE2V1I3L0A0 370 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 CSF2RAP15509 400 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 GPD2P43304 727 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 TUBB2AQ13885 445 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 SCN5AQ14524 2016 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 C2CD6Q53TS8 623 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 PAPD7Q5XG87 772 aaKnown RBP22.28■■□□□ 1.16
VPS28-208ENST00000527797 DAAM2Q86T65 1068 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 UBA3Q8TBC4 463 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 ZNF564Q8TBZ8 553 aaPredicted RBP22.28■■□□□ 1.16
VPS28-208ENST00000527797 SUSD3Q96L08 255 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 TUBB2BQ9BVA1 445 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 NRDE2Q9H7Z3 1164 aa22.28■■□□□ 1.16
VPS28-208ENST00000527797 CHORDC1Q9UHD1 332 aaPredicted RBP22.28■■□□□ 1.16
VPS28-208ENST00000527797 I3L4J1 428 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 BUB1BO60566 1050 aaPredicted RBP22.27■■□□□ 1.16
VPS28-208ENST00000527797 FTCDO95954 541 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 CYP11A1P05108 521 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 PFKMP08237 780 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 B3GALNT2Q8NCR0 500 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 L2HGDHQ9H9P8 463 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 MRPL47Q9HD33 250 aaKnown RBP22.27■■□□□ 1.16
VPS28-208ENST00000527797 DNAJB4Q9UDY4 337 aa22.27■■□□□ 1.16
VPS28-208ENST00000527797 BRCA2P51587 3418 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 ITGB1P05556 798 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 PTPN1P18031 435 aaKnown RBP22.26■■□□□ 1.15
VPS28-208ENST00000527797 MEI1Q5TIA1 1274 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 SLFN11Q7Z7L1 901 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 PHLDB2Q86SQ0 1253 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 LPIN3Q9BQK8 851 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 STRIP2Q9ULQ0 834 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 PRG3Q9Y2Y8 225 aaPredicted RBP22.26■■□□□ 1.15
VPS28-208ENST00000527797 SCINQ9Y6U3 715 aa22.26■■□□□ 1.15
VPS28-208ENST00000527797 TDRD15B5MCY1 1934 aaKnown RBP22.25■■□□□ 1.15
VPS28-208ENST00000527797 EFCAB14O75071 495 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 UPP2O95045 317 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 ALDH2P05091 517 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 TYMPP19971 482 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 ACAT1P24752 427 aaKnown RBP22.25■■□□□ 1.15
VPS28-208ENST00000527797 PCSK1P29120 753 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 AMPD2Q01433 879 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 PLEKHA7Q6IQ23 1121 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 SYNCQ9H7C4 482 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 PARVAQ9NVD7 372 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 CYTH4Q9UIA0 394 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 CDH9Q9ULB4 789 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 PCDHB8Q9UN66 801 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 SAR1BQ9Y6B6 198 aa22.25■■□□□ 1.15
VPS28-208ENST00000527797 F8W810 466 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 RIOK3O14730 519 aaKnown RBP22.24■■□□□ 1.15
VPS28-208ENST00000527797 TRAPPC3O43617 180 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 AMHP03971 560 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 SETSIPP0DME0 302 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PSMC1P62191 440 aaKnown RBP22.24■■□□□ 1.15
VPS28-208ENST00000527797 PKDCCQ504Y2 493 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 C11orf63Q6NUN7 778 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PEX26Q7Z412 305 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 LRRC43Q8N309 656 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 ANKRD52Q8NB46 1076 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 TET1Q8NFU7 2136 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 C18orf8Q96DM3 657 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 SYT15Q9BQS2 421 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 TMEM175Q9BSA9 504 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 COLEC11Q9BWP8 271 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PRKAG2Q9UGJ0 569 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 CDC23Q9UJX2 597 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 MRFAP1Q9Y605 127 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 NRP1O14786 923 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 NCK2O43639 380 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 ATP2C2O75185 946 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 TADA2AO75478 443 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 CCDC130P13994 396 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PRLRP16471 622 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 ADORA2BP29275 332 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PDCLQ13371 301 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 MAMLD1Q13495 774 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 PTPN20Q4JDL3 420 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 TTC30AQ86WT1 665 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 THEM5Q8N1Q8 247 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 SLC2A14Q8TDB8 520 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 IPO4Q8TEX9 1081 aaKnown RBP22.24■■□□□ 1.15
VPS28-208ENST00000527797 CPXM1Q96SM3 734 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 HNRNPABQ99729 332 aaKnown RBP22.24■■□□□ 1.15
VPS28-208ENST00000527797 TLR10Q9BXR5 811 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 MIS12Q9H081 205 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 GOLPH3Q9H4A6 298 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 WDR35Q9P2L0 1181 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 SNX12Q9UMY4 172 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms