RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 SPOCD1Q6ZMY3 1216 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 HOOK3Q86VS8 718 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 ARFGAP2Q8N6H7 521 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 ARFGAP1Q8N6T3 406 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 CDC42EP4Q9H3Q1 356 aaKnown RBP13.74□□□□□ -0.21
SEC13-216ENST00000479868 DPP3Q9NY33 737 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 SCN1AP35498 2009 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 TLDC2A0PJX2 215 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 SMIM23A6NLE4 172 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 SIGLEC16A6NMB1 481 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 MICAL2O94851 1124 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 ATF2P15336 505 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 KYAT1Q16773 422 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 SMYD5Q6GMV2 418 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 ZNF410Q86VK4 478 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 XYLT1Q86Y38 959 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 EMC1Q8N766 993 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 PWWP2AQ96N64 755 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 ADPGKQ9BRR6 497 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 DDX23Q9BUQ8 820 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 FAM49AQ9H0Q0 323 aaPredicted RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 DNAJC17Q9NVM6 304 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 LCMT1Q9UIC8 334 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 DNPEPQ9ULA0 475 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.73□□□□□ -0.21
SEC13-216ENST00000479868 C2CD2Q9Y426 696 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 CELF2O95319 508 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 PSMA2P25787 234 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 HOXA11P31270 313 aaPredicted RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 CETN2P41208 172 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 FKBP1BP68106 108 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 IRX5P78411 483 aaPredicted RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 PTGISQ16647 500 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 IQSEC1Q6DN90 963 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 ZNF365Q70YC5 407 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 EPS8L3Q8TE67 593 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 IPO4Q8TEX9 1081 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 KIF12Q96FN5 646 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 ADAMTS10Q9H324 1103 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 CYP3A43Q9HB55 503 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 CDHR5Q9HBB8 845 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 METTL5Q9NRN9 209 aaKnown RBP13.73□□□□□ -0.21
SEC13-216ENST00000479868 ITGA11Q9UKX5 1188 aa13.73□□□□□ -0.21
SEC13-216ENST00000479868 hCG_1818297A0A087WSY0 165 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 LRRD1A4D1F6 860 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 M0QYV0 167 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 DYNC1LI2O43237 492 aaPredicted RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 LIASO43766 372 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 LRCH4O75427 683 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 TJP3O95049 919 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 NPTXRO95502 500 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 P4HA1P13674 534 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 KLRC2P26717 231 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 IL1R2P27930 398 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 GRM5P41594 1212 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 CDKN2BP42772 138 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 NDST1P52848 882 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 SEC24CP53992 1094 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 SLC25A11Q02978 314 aaKnown RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 SMTNL2Q2TAL5 461 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 TFDP3Q5H9I0 405 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 DPH6Q7L8W6 267 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 GLIS1Q8NBF1 620 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 LENG1Q96BZ8 264 aaPredicted RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 PGM2Q96G03 612 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 HEXIM2Q96MH2 286 aaKnown RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 TRAIPQ9BWF2 469 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 EPN3Q9H201 632 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 SYNCQ9H7C4 482 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 ANAPC5Q9UJX4 755 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 ACSL3O95573 720 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 GPD2P43304 727 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 SLCO1A2P46721 670 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 RBP5P82980 135 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 INCA1Q0VD86 236 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 BYSLQ13895 437 aaKnown RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 KCNT1Q5JUK3 1230 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 GSTA5Q7RTV2 222 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 C2orf69Q8N8R5 385 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 CCDC89Q8N998 374 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 UBA3Q8TBC4 463 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 HAUS1Q96CS2 278 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 CPA4Q9UI42 421 aa13.72□□□□□ -0.21
SEC13-216ENST00000479868 BARX2Q9UMQ3 279 aaPredicted RBP13.72□□□□□ -0.21
SEC13-216ENST00000479868 SLC15A5A6NIM6 579 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 C3orf70A6NLC5 250 aaPredicted RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 NDUFAB1O14561 156 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 GPR32O75388 356 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 VDRP11473 427 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 CYP3A5P20815 502 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 PSMC4P43686 418 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 GSCP56915 257 aaPredicted RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 COPS2P61201 443 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 IFI35P80217 286 aaPredicted RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 TRMT10CQ7L0Y3 403 aaKnown RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 SRLQ86TD4 932 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 FNIP1Q8TF40 1166 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 KAT2BQ92831 832 aa13.71□□□□□ -0.21
SEC13-216ENST00000479868 ZMAT2Q96NC0 199 aaKnown RBP13.71□□□□□ -0.21
SEC13-216ENST00000479868 EIF2AQ9BY44 585 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms