RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 WASHC2AQ641Q2 1341 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 LRRC14BA6NHZ5 514 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 H3BNC9 293 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 VIL1P09327 827 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 CCKARP32238 428 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 POLGP54098 1239 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 EEFSECP57772 596 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 KHDC1Q4VXA5 237 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 SLC4A10Q6U841 1118 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 NAPRTQ6XQN6 538 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 GADL1Q6ZQY3 521 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 FAM90A1Q86YD7 464 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 COA7Q96BR5 231 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 CNPPD1Q9BV87 410 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 C1orf43Q9BWL3 253 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 FSD1LQ9BXM9 530 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 SSX2IPQ9Y2D8 614 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 PHLDB1Q86UU1 1377 aa4.49□□□□□ -1.69
CCDC88A-212ENST00000474059 CYP2C18P33260 490 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 MMP13P45452 471 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 GCLCP48506 637 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 LRRC41Q15345 812 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 FCRL6Q6DN72 434 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 MEPCEQ7L2J0 689 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 PNLDC1Q8NA58 520 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 C1orf162Q8NEQ5 155 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 CYP2W1Q8TAV3 490 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 COQ8BQ96D53 544 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 BRD9Q9H8M2 597 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 KLHL13Q9P2N7 655 aa4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 SAP30BPQ9UHR5 308 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-212ENST00000474059 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 PRR23D1E9PI22 279 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 SOAT2O75908 522 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 CHEK2O96017 543 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 PRR23D2P0DMB1 279 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 ENGP17813 658 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 ITGALP20701 1170 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 PRDX5P30044 214 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 PHKA1P46020 1223 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 KIF22Q14807 665 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 PCID2Q5JVF3 399 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 TREML2Q5T2D2 321 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 ZNF804AQ7Z570 1209 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 WDR53Q7Z5U6 358 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 AOPEPQ8N6M6 819 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 VCPIP1Q96JH7 1222 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 ASB2Q96Q27 587 aa4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 THAP7Q9BT49 309 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-212ENST00000474059 LY6G6EA0A0G2JKS1 128 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 FCHO1O14526 889 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 DCLK1O15075 740 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 SNHG28P0DPA3 235 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 RARBP10826 455 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 CYP2C19P33261 490 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 HTRA4P83105 476 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 HOXA4Q00056 320 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 TEDDM1Q5T9Z0 273 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 KRT26Q7Z3Y9 468 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 CNGA4Q8IV77 575 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 TRNAU1APQ9NX07 287 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 CFAP97Q9P2B7 532 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 ADAMTS5Q9UNA0 930 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 RAD54BQ9Y620 910 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 WDR17Q8IZU2 1322 aa4.46□□□□□ -1.7
CCDC88A-212ENST00000474059 SOCS2O14508 198 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 ERC2O15083 957 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 SLC16A3O15427 465 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 ATP5F1P24539 256 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 ALDH9A1P49189 494 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 NANOS2P60321 138 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 TRIP6Q15654 476 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 CLUL1Q15846 466 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 TRIM71Q2Q1W2 868 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 MIDNQ504T8 468 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 RNF219Q5W0B1 726 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 TMEM108Q6UXF1 575 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 PIP4P1Q86T03 277 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 AMOTL1Q8IY63 956 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 CNTD1Q8N815 330 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 SCAF8Q9UPN6 1271 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 SH2B3Q9UQQ2 575 aa4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 FNDC1Q4ZHG4 1894 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-212ENST00000474059 IGKV2D-30A0A075B6S6 120 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 QSOX1O00391 747 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 TJP3O95049 919 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 FESP07332 822 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 PIK3CGP48736 1102 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 SLC16A1P53985 500 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 KIF23Q02241 960 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 TAF7LQ5H9L4 462 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 PXDC1Q5TGL8 231 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 KIRREL2Q6UWL6 708 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 DLK2Q6UY11 383 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 TRIM72Q6ZMU5 477 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 USP37Q86T82 979 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 IGFBPL1Q8WX77 278 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 ATG4AQ8WYN0 398 aa4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 SERTAD3Q9UJW9 196 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms