RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 ITFG1Q8TB96 612 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 FGF13Q92913 245 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 CDH9Q9ULB4 789 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 PRR33A8MZF0 331 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ANHXE9PGG2 379 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 STX10O60499 249 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 VNN1O95497 513 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 HAPLN1P10915 354 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 GTF2H1P32780 548 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 GNL1P36915 607 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 EPHA5P54756 1037 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 SIGLEC14Q08ET2 396 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 VEPH1Q14D04 833 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 MAPRE1Q15691 268 aaKnown RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ZNF699Q32M78 642 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 MGAT5BQ3V5L5 792 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ZNF667Q5HYK9 610 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 PRSS36Q5K4E3 855 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 C1orf220Q5T0J3 134 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 FAM171BQ6P995 826 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 FOXR2Q6PJQ5 311 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ZC3H3Q8IXZ2 948 aaKnown RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 TRIML1Q8N9V2 468 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 KBTBD7Q8WVZ9 684 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 PKMYT1Q99640 499 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 SEPT5Q99719 369 aaPredicted RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 SNX25Q9H3E2 840 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ABCB6Q9NP58 842 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 ASAH2Q9NR71 780 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 GDE1Q9NZC3 331 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 KIAA1468Q9P260 1216 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 NXF1Q9UBU9 619 aaKnown RBP13.95□□□□□ -0.18
COL28A1-206ENST00000465339 GTF3C4Q9UKN8 822 aa13.95□□□□□ -0.18
COL28A1-206ENST00000465339 BICDL2A1A5D9 508 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 PPP1R3GB7ZBB8 358 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SLC16A3O15427 465 aaKnown RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 FGF19O95750 216 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 P4HA1P13674 534 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 ACAT1P24752 427 aaKnown RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 LMO2P25791 158 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 RPL10AP62906 217 aaKnown RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 CAMK4Q16566 473 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SLC5A9Q2M3M2 681 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 C4orf50Q6ZRC1 276 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 MTSS1LQ765P7 747 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 DNAJB7Q7Z6W7 309 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SPATA2LQ8IUW3 424 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 NPAS3Q8IXF0 933 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SLC44A3Q8N4M1 653 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 TTC9BQ8N6N2 239 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 OR6B3Q8NGW1 331 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 PSMG2Q969U7 264 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 FUBP3Q96I24 572 aaKnown RBP eCLIP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SYT15Q9BQS2 421 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 MRPL45Q9BRJ2 306 aaKnown RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 LRFN3Q9BTN0 628 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 GPR88Q9GZN0 384 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 DNAJC25Q9H1X3 360 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 SLC24A3Q9HC58 644 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 C11orf16Q9NQ32 467 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 TMLHEQ9NVH6 421 aa13.94□□□□□ -0.18
COL28A1-206ENST00000465339 ABI2Q9NYB9 513 aaPredicted RBP13.94□□□□□ -0.18
COL28A1-206ENST00000465339 TECTAO75443 2155 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 BIN1O00499 593 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 ASS1P00966 412 aaKnown RBP13.93□□□□□ -0.18
COL28A1-206ENST00000465339 HLA-DRAP01903 254 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 PDGFRBP09619 1106 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 MYL4P12829 197 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 BMP6P22004 513 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 GCLMP48507 274 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 PMS1P54277 932 aaKnown RBP13.93□□□□□ -0.18
COL28A1-206ENST00000465339 PPP3CAQ08209 521 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 HTR4Q13639 388 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 DSG2Q14126 1118 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 TAF12Q16514 161 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 CFAP221Q4G0U5 840 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 BMP8AQ7Z5Y6 402 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 FILIP1Q7Z7B0 1213 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 CCDC150Q8NCX0 1101 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 FAM200AQ8TCP9 573 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 ING5Q8WYH8 240 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 MCRS1Q96EZ8 462 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 EEF2KMTQ96G04 330 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 CEP63Q96MT8 703 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 GBP4Q96PP9 640 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 PI4K2AQ9BTU6 479 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 LRRC3Q9BY71 257 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 IMPG2Q9BZV3 1241 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 METTL14Q9HCE5 456 aaKnown RBP13.93□□□□□ -0.18
COL28A1-206ENST00000465339 TMEM8AQ9HCN3 771 aa13.93□□□□□ -0.18
COL28A1-206ENST00000465339 MAGEC2Q9UBF1 373 aaPredicted RBP13.93□□□□□ -0.18
COL28A1-206ENST00000465339 MYBPHLA2RUH7 354 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 TRIM49BA6NDI0 452 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 FAM86C2PA6NEL3 165 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 TMEM221A6NGB7 291 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 M0R296 226 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 ATP2C2O75185 946 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 SOAT2O75908 522 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 CLSTN1O94985 981 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 TRIM49P0CI25 452 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms