RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SPICE1Q8N0Z3 855 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 VPS37AQ8NEZ2 397 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 NUP133Q8WUM0 1156 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 LINC00476Q8WZB0 136 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 GJA10Q969M2 543 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 PTCD3Q96EY7 689 aaKnown RBP4.32□□□□□ -1.72
VPS41-207ENST00000439468 LRIG1Q96JA1 1093 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 CCDC138Q96M89 665 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 RIPOR3Q96MK2 946 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 TRIM54Q9BYV2 358 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 AS3MTQ9HBK9 375 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 SYBUQ9NX95 663 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 ZDHHC8Q9ULC8 765 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 CDYLQ9Y232 598 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 TBC1D30Q9Y2I9 924 aa4.32□□□□□ -1.72
VPS41-207ENST00000439468 EPN1Q9Y6I3 576 aaPredicted RBP4.32□□□□□ -1.72
VPS41-207ENST00000439468 TRGV11A0A075B6L2 103 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 POM121BA6NF01 834 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 M0QYG6 137 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FRS3O43559 492 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 UNC5CO95185 931 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FCER1AP12319 257 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 EN2P19622 333 aaPredicted RBP4.31□□□□□ -1.72
VPS41-207ENST00000439468 TGM1P22735 817 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 TM4SF4P48230 202 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 RPS16P62249 146 aaKnown RBP4.31□□□□□ -1.72
VPS41-207ENST00000439468 SLFN5Q08AF3 891 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FOXI1Q12951 378 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 IFIT5Q13325 482 aaKnown RBP4.31□□□□□ -1.72
VPS41-207ENST00000439468 OS9Q13438 667 aaPredicted RBP4.31□□□□□ -1.72
VPS41-207ENST00000439468 GEN1Q17RS7 908 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FAM209BQ5JX69 171 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 SLC30A10Q6XR72 485 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 SLC15A4Q8N697 577 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 PDPRQ8NCN5 879 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FAM46DQ8NEK8 389 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 FBXO41Q8TF61 875 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 KIAA1191Q96A73 305 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 SGCZQ96LD1 299 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 NLRC4Q9NPP4 1024 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 GNL3LQ9NVN8 582 aaKnown RBP4.31□□□□□ -1.72
VPS41-207ENST00000439468 FAM30AQ9NZY2 134 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 LRIT1Q9P2V4 623 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 HSFX1Q9UBD0 423 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 DMTF1Q9Y222 760 aa4.31□□□□□ -1.72
VPS41-207ENST00000439468 TBC1D4O60343 1298 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 ESRRBO95718 433 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 RARBP10826 455 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 CHRM3P20309 590 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 ABCB4P21439 1286 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 TNFSF4P23510 183 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 ADRA1BP35368 520 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 HTR3AP46098 478 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 STT3AP46977 705 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 UCP3P55916 312 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 KRTAP1-1Q07627 177 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 SLC13A2Q13183 592 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 CYP2A13Q16696 494 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 PREPLQ4J6C6 727 aaPredicted RBP4.3□□□□□ -1.72
VPS41-207ENST00000439468 EMC10Q5UCC4 262 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 ZDHHC24Q6UX98 284 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 Q6ZNX1 250 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 TOGARAM2Q6ZUX3 1019 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 MICU3Q86XE3 530 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 MPP5Q8N3R9 675 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 AOPEPQ8N6M6 819 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 RNF152Q8N8N0 203 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 OR6B3Q8NGW1 331 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 TMEM125Q96AQ2 219 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 NACC2Q96BF6 587 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 BOD1Q96IK1 185 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 POLR3GLQ9BT43 218 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 BTBD1Q9H0C5 482 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 GPR35Q9HC97 309 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 CFAP97Q9P2B7 532 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 MED16Q9Y2X0 877 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 RIPOR2Q9Y4F9 1068 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 INSL6Q9Y581 213 aa4.3□□□□□ -1.72
VPS41-207ENST00000439468 SPATA31A6Q5VVP1 1343 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 ISM1B1AKI9 464 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 RASA4BC9J798 803 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 RASA4O43374 803 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 GRPP07492 148 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 SLC11A2P49281 568 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 TOB1P50616 345 aaPredicted RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 VAV2P52735 878 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 MRPS35P82673 323 aaKnown RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 HTRA4P83105 476 aaPredicted RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 ZNF844Q08AG5 666 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 SCAPQ12770 1279 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 MORC3Q14149 939 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 HABP2Q14520 560 aaPredicted RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 RRAGBQ5VZM2 374 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 HIBCHQ6NVY1 386 aaPredicted RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 C1orf228Q6PIY5 440 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 ZNF783Q6ZMS7 281 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 RD3Q7Z3Z2 195 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 C11orf96Q7Z7L8 435 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 ADGRG3Q86Y34 549 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 PDSS2Q86YH6 399 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms