RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 SENP6Q9GZR1 1112 aaPredicted RBP4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 SERHL2Q9H4I8 314 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 GREM2Q9H772 168 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 DCTPP1Q9H773 170 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 BCO1Q9HAY6 547 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 CWC25Q9NXE8 425 aaPredicted RBP4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 ZBTB1Q9Y2K1 713 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 HS3ST4Q9Y661 456 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 MYH14Q7Z406 1995 aaKnown RBP4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 UBR3Q6ZT12 1888 aa4.56□□□□□ -1.68
HMGB3P20-201ENST00000417997 RGPD3A6NKT7 1758 aaPredicted RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 RGPD4Q7Z3J3 1758 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 ARAP2Q8WZ64 1704 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 UTYO14607 1347 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 CXorf49A8MYA2 514 aaPredicted RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 DIRC3C9JPN6 131 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 EIF5BO60841 1220 aaKnown RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 PRKD3O94806 890 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 RHOBTB3O94955 611 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 NUDT3O95989 172 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 IGKV5-2P06315 115 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 CYP19A1P11511 503 aaPredicted RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 GSPT1P15170 499 aaKnown RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 DDX6P26196 483 aaKnown RBP eCLIP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 IL6STP40189 918 aaPredicted RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 USP14P54578 494 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 GUCY1B3Q02153 619 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 FAPQ12884 760 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 RRP12Q5JTH9 1297 aaKnown RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 ZNF772Q68DY9 489 aaPredicted RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 CASC1Q6TDU7 716 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 PCSK4Q6UW60 755 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 Q6ZVL8 140 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 MED25Q71SY5 747 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 CCDC191Q8NCU4 936 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 SUPT20HQ8NEM7 779 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 WDR66Q8TBY9 1149 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 SSH3Q8TE77 659 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 KIF1BPQ96EK5 621 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 GPATCH3Q96I76 525 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 BICC1Q9H694 974 aaKnown RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 RBM12Q9NTZ6 932 aaKnown RBP4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 PACSIN3Q9UKS6 424 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 DNM3Q9UQ16 869 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 ATP11BQ9Y2G3 1177 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 FPGT-TNNI3KV9GXZ4 949 aa4.55□□□□□ -1.68
HMGB3P20-201ENST00000417997 MYH7P12883 1935 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MYH13Q9UKX3 1938 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 LRP5O75197 1615 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 GRID2IPA4D2P6 1211 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 TMEM200CA6NKL6 621 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 DRGXA6NNA5 263 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 PJA2O43164 708 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 GPR39O43194 453 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 ATP5JP18859 108 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MX1P20591 662 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 GPTP24298 496 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CRKLP46109 303 aaKnown RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 SLC5A3P53794 718 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MALLQ13021 153 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 RESTQ13127 1097 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 G3BP1Q13283 466 aaKnown RBP eCLIP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MTX1Q13505 466 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CLUL1Q15846 466 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 BEAN1Q3B7T3 259 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 BMP2KLQ5H9B9 411 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 FAM102AQ5T9C2 384 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 TTC22Q5TAA0 569 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 TSHZ3Q63HK5 1081 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 AFMIDQ63HM1 303 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 ZNF572Q7Z3I7 529 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 KCNK18Q7Z418 384 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 SPATS2Q86XZ4 545 aaKnown RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CLASRPQ8N2M8 674 aaKnown RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CAVIN3Q969G5 261 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MRI1Q9BV20 369 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 REXO4Q9GZR2 422 aaKnown RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 IL1RAPL2Q9NP60 686 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 LANCL2Q9NS86 450 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CCM2LQ9NUG4 571 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 MOCS1Q9NZB8 636 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 RNF181Q9P0P0 153 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 ZNHIT2Q9UHR6 403 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 CCNL1Q9UK58 526 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 AJAP1Q9UKB5 411 aaPredicted RBP4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 PCDHGA2Q9Y5H1 932 aa4.54□□□□□ -1.68
HMGB3P20-201ENST00000417997 AOX1Q06278 1338 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 CDHR2Q9BYE9 1310 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ERVV-1B6SEH8 477 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 WNT10BO00744 389 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 IFIT2P09913 472 aaKnown RBP4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ALOX15P16050 662 aaPredicted RBP4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 PROZP22891 400 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 SREBF1P36956 1147 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 GPR3P46089 330 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 RBM6P78332 1123 aaKnown RBP4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 SP140Q13342 867 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ITPK1Q13572 414 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 TP53BP2Q13625 1128 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 Q6YL49 198 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms