RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SNRPAP09012 282 aaKnown RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 MCF2P10911 925 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 PBX1P40424 430 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TMEM62Q0P6H9 643 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 EFTUD2Q15029 972 aaKnown RBP eCLIP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 EFHC2Q5JST6 749 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 LRRC8EQ6NSJ5 796 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 SLC12A6Q9UHW9 1150 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 ZNF711Q9Y462 761 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 RPL21P46778 160 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 BEST2Q8NFU1 509 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 PRPF31Q8WWY3 499 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 KRT35Q92764 455 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 TATDN2Q93075 761 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 E2F7Q96AV8 911 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 NSL1Q96IY1 281 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 MMTAG2Q9BU76 263 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 C2orf40Q9H1Z8 148 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 NAALADL1Q9UQQ1 740 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 RREB1Q92766 1687 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 ASAP2O43150 1006 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 KIF1CO43896 1103 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 PPP1R11O60927 126 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 CHEK2O96017 543 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 ATP6V1B1P15313 513 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 PTENP60484 403 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 PPATQ06203 517 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 LAYNQ6UX15 382 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 SV2AQ7L0J3 742 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 EMC1Q8N766 993 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 ZSWIM2Q8NEG5 633 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 NCLNQ969V3 563 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 ATG4CQ96DT6 458 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 SGF29Q96ES7 293 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 KCND2Q9NZV8 630 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 FBXO40Q9UH90 709 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 SIK3Q9Y2K2 1263 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 REXO2Q9Y3B8 237 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 ORC6Q9Y5N6 252 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 CCDC88AQ3V6T2 1871 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 TISP43B9A030 160 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 CSDE1O75534 798 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 AARSP49588 968 aaKnown RBP eCLIP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 CASP5P51878 434 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 TNFAIP2Q03169 654 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 TAP1Q03518 808 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 SGSM1Q2NKQ1 1148 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 MTDHQ86UE4 582 aaKnown RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 KAT5Q92993 513 aa11.25□□□□□ -0.61
CCDC40-204ENST00000397545 PRMT6Q96LA8 375 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.25□□□□□ -0.61
CCDC40-204ENST00000397545 UBA6A0AVT1 1052 aaPredicted RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 NKRFO15226 690 aaKnown RBP eCLIP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 RARBP10826 455 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 SPON2Q9BUD6 331 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 TEX13BQ9BXU2 312 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 CALCAP01258 141 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 RARAP10276 462 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 TXNP10599 105 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 EFNA5P52803 228 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 GEMIN4P57678 1058 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 RARS2Q5T160 578 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 C11orf63Q6NUN7 778 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 LRRC6Q86X45 466 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 DDIASQ8IXT1 998 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 MICALL2Q8IY33 904 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 TTC8Q8TAM2 541 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 FAM96AQ9H5X1 160 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 CNOT7Q9UIV1 285 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 NPTX2P47972 431 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 GCLCP48506 637 aaPredicted RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 PAPOLAP51003 745 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 ANGPTL8Q6UXH0 198 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 NT5DC3Q86UY8 548 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 FBXO36Q8NEA4 188 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 ZBTB10Q96DT7 871 aa11.24□□□□□ -0.61
CCDC40-204ENST00000397545 MOV10L1Q9BXT6 1211 aaKnown RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 ZNF70Q9UC06 446 aaPredicted RBP11.24□□□□□ -0.61
CCDC40-204ENST00000397545 FAM86B1E9PN63 330 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 DFFAO00273 331 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 P4HA2O15460 535 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 GJB6O95452 261 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 FAM86B2P0C5J1 330 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 PAMP19021 973 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 SREBF1P36956 1147 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 DEUP1Q05D60 604 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 SCG3Q8WXD2 468 aaKnown RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 TMEM237Q96Q45 408 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 FHDC1Q9C0D6 1143 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 MTFR1LQ9H019 292 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 GPATCH2LQ9NWQ4 482 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 MTO1Q9Y2Z2 717 aaKnown RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 NUMBP49757 651 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 OTUD4Q01804 1114 aaKnown RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 CENPCQ03188 943 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 USP10Q14694 798 aaKnown RBP11.23□□□□□ -0.61
CCDC40-204ENST00000397545 SLC10A4Q96EP9 437 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 NIF3L1Q9GZT8 377 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 EML1O00423 815 aa11.23□□□□□ -0.61
CCDC40-204ENST00000397545 PIAS1O75925 651 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms