RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 KRT72Q14CN4 511 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 FASTKD3Q14CZ7 662 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ZRSR2Q15696 482 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 TAZQ16635 292 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CTC1Q2NKJ3 1217 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 TBC1D10BQ4KMP7 808 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 TAF1BQ53T94 588 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 C2CD6Q53TS8 623 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ZFYVE27Q5T4F4 411 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 WDR78Q5VTH9 848 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 DAB2IPQ5VWQ8 1189 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 KAZNQ674X7 775 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 DCUN1D2Q6PH85 259 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PAXIP1Q6ZW49 1069 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 BBS12Q6ZW61 710 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PRUNE1Q86TP1 453 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PASD1Q8IV76 773 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 C4orf33Q8N1A6 199 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NAT8LQ8N9F0 302 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 BANPQ8N9N5 519 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GLIS1Q8NBF1 620 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 FNIP1Q8TF40 1166 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 MZB1Q8WU39 189 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 APBB2Q92870 758 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 SPDL1Q96EA4 605 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 FAM118BQ9BPY3 351 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 VPS33BQ9H267 617 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 MANSC1Q9H8J5 431 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ZFATQ9P243 1243 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 STOML1Q9UBI4 398 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NKX1-2Q9UD57 310 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 POLIQ9UNA4 740 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CLUHO75153 1309 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 CNTNAP2Q9UHC6 1331 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 IQANK1A0A1B0GTG1 560 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 A0A1W2PPM1 405 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PI4K2BG5E9Z4 385 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PLSCR1O15162 318 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ATP5BP06576 529 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ZSCAN5DPP0CG00 497 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 DHRS4L1P0CG22 281 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 GLRA2P23416 452 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 POLR2BP30876 1174 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 OAZ1P54368 228 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 YWHAEP62258 255 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 RPL7AP62424 266 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PLCB3Q01970 1234 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PRKCEQ02156 737 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 CDK18Q07002 472 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 NCOA4Q13772 614 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 EMC2Q15006 297 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SURF1Q15526 300 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 HADHQ16836 314 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SGSM1Q2NKQ1 1148 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ATP13A4Q4VNC1 1196 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 MEX3CQ5U5Q3 659 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SPOPLQ6IQ16 392 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SWSAP1Q6NVH7 229 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ABHD15Q6UXT9 468 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 APBB1IPQ7Z5R6 666 aaPredicted RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PDIK1LQ8N165 341 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF276Q8N554 614 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 NSUN6Q8TEA1 469 aaKnown RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SPOCK2Q92563 424 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 CYTH2Q99418 400 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PAFAH2Q99487 392 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 BTBD10Q9BSF8 475 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 PORCNQ9H237 461 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 KIF9Q9HAQ2 790 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 JPH1Q9HDC5 661 aaPredicted RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SLC9A2Q9UBY0 812 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 SEPT9Q9UHD8 586 aaPredicted RBP10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ZNRF3Q9ULT6 936 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 NUB1Q9Y5A7 615 aa10.5□□□□□ -0.73
COL17A1-203ENST00000393211 ADGRA2Q96PE1 1338 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 LRRD1A4D1F6 860 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 C3orf70A6NLC5 250 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 K7ERI5 159 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 KLF11O14901 512 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 HAUS5O94927 633 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ASS1P00966 412 aaKnown RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 WEE2P0C1S8 567 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ETS1P14921 441 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 EPHB2P29323 1055 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 CTCFP49711 727 aaPredicted RBP10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ACOT2P49753 483 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 SLC18A2Q05940 514 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ACAP1Q15027 740 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 MAPK6Q16659 721 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 C4orf50Q6ZRC1 276 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 C3orf62Q6ZUJ4 267 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 KRT27Q7Z3Y8 459 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 WDR49Q8IV35 697 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 TRIM42Q8IWZ5 723 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 PALM2Q8IXS6 379 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 ARHGAP24Q8N264 748 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 AGBL3Q8NEM8 1001 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 DEPTORQ8TB45 409 aa10.49□□□□□ -0.73
COL17A1-203ENST00000393211 MICAL1Q8TDZ2 1067 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms