RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 C19orf18Q8NEA5 215 aa12.97□□□□□ -0.33
VPS13A-204ENST00000376634 STRBPQ96SI9 672 aaKnown RBP12.97□□□□□ -0.33
VPS13A-204ENST00000376634 PIH1D3Q9NQM4 214 aaKnown RBP12.97□□□□□ -0.33
VPS13A-204ENST00000376634 CRLS1Q9UJA2 301 aa12.97□□□□□ -0.33
VPS13A-204ENST00000376634 TEX28O15482 410 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 TGM2P21980 687 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 KCNB1Q14721 858 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 ABCA8O94911 1581 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 DYTNA2CJ06 578 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 SNRNP35Q16560 246 aaKnown RBP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 GLMNQ92990 594 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 PAK5Q9P286 719 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 TRMT6Q9UJA5 497 aaKnown RBP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 GSTM1P09488 218 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 MRPS35P82673 323 aaKnown RBP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 NT5DC4Q86YG4 428 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 ERVK-10P10266 1014 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 MAPK1P28482 360 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 MTMR2Q13614 643 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 TTC26A0AVF1 554 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 ZNF438Q7Z4V0 828 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 CYP4Z1Q86W10 505 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 SGSM3Q96HU1 749 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 OSBPL8Q9BZF1 889 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 A0A1W2PQC6 194 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 MTRF1O75570 445 aaKnown RBP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 FYNP06241 537 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 APLFQ8IW19 511 aaPredicted RBP12.96□□□□□ -0.33
VPS13A-204ENST00000376634 SLC25A41Q8N5S1 370 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 RPS6KB2Q9UBS0 482 aa12.96□□□□□ -0.33
VPS13A-204ENST00000376634 SLC26A4O43511 780 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 FDX1P10109 184 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 GRK3P35626 688 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 FLT3P36888 993 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 ARID5BQ14865 1188 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 POLD3Q15054 466 aaPredicted RBP12.96□□□□□ -0.34
VPS13A-204ENST00000376634 SGSM1Q2NKQ1 1148 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 HAUS6Q7Z4H7 955 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 KLHL25Q9H0H3 589 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 ZBTB39O15060 712 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 SFSWAPQ12872 951 aaKnown RBP12.96□□□□□ -0.34
VPS13A-204ENST00000376634 TTLL9Q3SXZ7 439 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 CCT8L2Q96SF2 557 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 NT5C1AQ9BXI3 368 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 RSAD1Q9HA92 442 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 CLTCL1P53675 1640 aa12.96□□□□□ -0.34
VPS13A-204ENST00000376634 C2orf81A6NN90 581 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 RFX3P48380 749 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SMTNL2Q2TAL5 461 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 C10orf120Q5SQS8 335 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 C12orf60Q5U649 245 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CDH24Q86UP0 819 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 RIBC1Q8N443 379 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 FAR2Q96K12 515 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SLITRK1Q96PX8 696 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SERHL2Q9H4I8 314 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SERHLQ9NQF3 203 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ERAP1Q9NZ08 941 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SOAT2O75908 522 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SLC2A3P11169 496 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ZNF544Q6NX49 715 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CENPLQ8N0S6 344 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ERP27Q96DN0 273 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 MANSC1Q9H8J5 431 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 MDH1P40925 334 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 FMO5P49326 533 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CAMK2GQ13555 558 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 C1DQ13901 141 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 UNC45BQ8IWX7 931 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 STON1Q9Y6Q2 735 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CYP19A1P11511 503 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 XPO6Q96QU8 1125 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 VPS33BQ9H267 617 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 COPS7BQ9H9Q2 264 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SCUBE2Q9NQ36 999 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SRP68Q9UHB9 627 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 TMCC3Q9ULS5 477 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ATF5Q9Y2D1 282 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ATP6V1B1P15313 513 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 MZF1P28698 734 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ETFBP38117 255 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 GSTA3Q16772 222 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 OTOAQ7RTW8 1153 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 TBC1D10CQ8IV04 446 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CASP10Q92851 521 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 ZNF333Q96JL9 665 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SLC39A10Q9ULF5 831 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 HMBSP08397 361 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 PDGFRBP09619 1106 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 YWHAZP63104 245 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 FAM45BPQ6NSW5 357 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 MMGT1Q8N4V1 131 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CARD9Q9H257 536 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 PDP2Q9P2J9 529 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 SASH1O94885 1247 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 HSMCR30P0CW71 290 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 TMEM106CQ9BVX2 250 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 RNPEPQ9H4A4 650 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms