RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TAF12Q16514 161 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 GPR158Q5T848 1215 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 ZNF852Q6ZMS4 543 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 ARID3BQ8IVW6 561 aaPredicted RBP23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 FNBP1Q96RU3 617 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 PI4K2AQ9BTU6 479 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 TASP1Q9H6P5 420 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 ABCB6Q9NP58 842 aa23.29■■□□□ 1.32
CCDC28B-201ENST00000373602 MIA3Q5JRA6 1907 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 FAM237AA0A1B0GTK4 181 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 ZNF263O14978 683 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 TNNI1P19237 187 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 PCSK1P29120 753 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 WEE1P30291 646 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 PSMD2Q13200 908 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 KMT5BQ4FZB7 885 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 FRMD5Q7Z6J6 570 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 C1orf210Q8IVY1 113 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 KIAA0895Q8NCT3 520 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 GOLGA5Q8TBA6 731 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 CCDC127Q96BQ5 260 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 BCO2Q9BYV7 579 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 EXOC1Q9NV70 894 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 GTF3C4Q9UKN8 822 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 MRPS17Q9Y2R5 130 aaKnown RBP23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 ATP6V1DQ9Y5K8 247 aa23.28■■□□□ 1.32
CCDC28B-201ENST00000373602 HCRTO43612 131 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 MYL1P05976 194 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 HMGA1P17096 107 aaKnown RBP23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 TARSP26639 723 aaKnown RBP23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 FCHO2Q0JRZ9 810 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 KBTBD7Q8WVZ9 684 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 CLDN23Q96B33 292 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 GCNAQ96QF7 691 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 GZF1Q9H116 711 aaPredicted RBP23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 OBP2AQ9NY56 170 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 COL4A2P08572 1712 aa23.27■■□□□ 1.32
CCDC28B-201ENST00000373602 ARNTLO00327 626 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 MAN2B1O00754 1011 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 EXOC3O60645 756 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 CST3P01034 146 aaPredicted RBP23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 CYP2F1P24903 491 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 MAGEA9P43362 315 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 SYKP43405 635 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 GPR15P49685 360 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 CYP4F8P98187 520 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 CFAP221Q4G0U5 840 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 FAM171BQ6P995 826 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 GPIHBP1Q8IV16 184 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 YAF2Q8IY57 180 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 LRRC3BQ96PB8 259 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 SCAND2PQ9GZW5 306 aaPredicted RBP23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 ZMYM5Q9UJ78 669 aa23.26■■□□□ 1.31
CCDC28B-201ENST00000373602 MYBPHLA2RUH7 354 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 CHADO15335 359 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 NCAM2O15394 837 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 CSH1P0DML2 217 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 CSH2P0DML3 217 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 WARSP23381 471 aaKnown RBP23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 LMO2P25791 158 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 RPL10AP62906 217 aaKnown RBP23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 CCDC142Q17RM4 750 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 SDHAF4Q5VUM1 108 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 ASCL5Q7RTU5 278 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 TMEM150AQ86TG1 271 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 TMEM174Q8WUU8 243 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 ZNF516Q92618 1163 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 NKD2Q969F2 451 aaPredicted RBP23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 FUBP3Q96I24 572 aaKnown RBP eCLIP23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 SYT15Q9BQS2 421 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 SLC46A2Q9BY10 475 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 DMAC2Q9NW81 257 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 CDH9Q9ULB4 789 aa23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 NUP210Q8TEM1 1887 aaPredicted RBP23.25■■□□□ 1.31
CCDC28B-201ENST00000373602 A0A1W2PQ27 194 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 A0A1W2PQ64 194 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 A0A1W2PQD8 194 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 PRR23AA6NEV1 266 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 DPYSL4O14531 572 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 F11P03951 625 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 RPS9P46781 194 aaKnown RBP23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 NDUFA8P51970 172 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 MLLT6P55198 1093 aaPredicted RBP23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 NLRP12P59046 1061 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 FZD5Q13467 585 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 DDR2Q16832 855 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 SPATA2LQ8IUW3 424 aaPredicted RBP23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 MAML2Q8IZL2 1156 aaPredicted RBP23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 ZNF687Q8N1G0 1237 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 MMS19Q96T76 1030 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 KCTD10Q9H3F6 313 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 PIAS3Q9Y6X2 628 aa23.24■■□□□ 1.31
CCDC28B-201ENST00000373602 TICRRQ7Z2Z1 1910 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 ATP2C2O75185 946 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 NOL4O94818 638 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 PRAMEF12O95522 483 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 STAU1O95793 577 aaKnown RBP23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 RPN1P04843 607 aaKnown RBP23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 FAM163BP0C2L3 166 aa23.23■■□□□ 1.31
CCDC28B-201ENST00000373602 SP9P0CG40 484 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms