RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PCSK1P29120 753 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 ATP6V1E1P36543 226 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 PTGER2P43116 358 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 MROH9Q5TGP6 573 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 CYB5D1Q6P9G0 228 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 OR6J1Q8NGC5 347 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 ADNPQ9H2P0 1102 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 NOD2Q9HC29 1040 aa11.92□□□□□ -0.5
PTPRF-203ENST00000372407 SUPT3HO75486 399 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 CYP2C8P10632 490 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 GRIK1P39086 918 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 RPS6P62753 249 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DCAF6Q58WW2 860 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DAB2IPQ5VWQ8 1189 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 TMEM154Q6P9G4 183 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 ACTRT1Q8TDG2 376 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DDX50Q9BQ39 737 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 AGXT2Q9BYV1 514 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MAP3K20Q9NYL2 800 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 SUFUQ9UMX1 484 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 HBP1O60381 514 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 SYF2O95926 243 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MUTP22033 750 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MAP4P27816 1152 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NEK2P51955 445 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 CHI3L2Q15782 390 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NAPEPLDQ6IQ20 393 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 PATL1Q86TB9 770 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NUP93Q8N1F7 819 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 SH3KBP1Q96B97 665 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 ELMO2Q96JJ3 720 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 LATS2Q9NRM7 1088 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 ARHGAP20Q9P2F6 1191 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NALCNQ8IZF0 1738 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NRXN3Q9Y4C0 1643 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 PSTPIP1O43586 416 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 PYGLP06737 847 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DDX5P17844 614 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DDR1Q08345 913 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 CUL2Q13617 745 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 PRPF39Q86UA1 669 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MFN1Q8IWA4 741 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 SUGP1Q8IWZ8 645 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 CLEC4FQ8N1N0 589 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 C1orf131Q8NDD1 294 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 AGBL1Q96MI9 1066 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 ENO4A6NNW6 628 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DYNC1LI2O43237 492 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MED24O75448 989 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 GH1P01241 217 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 BRD2P25440 801 aaKnown RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MTFR1Q15390 333 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 NTRK3Q16288 839 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 MFSD14CQ5VZR4 134 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 CDR2LQ86X02 465 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-203ENST00000372407 TAGAPQ8N103 731 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 HPDLQ96IR7 371 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 SLC4A9Q96Q91 983 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 RUSC1Q9BVN2 902 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF711Q9Y462 761 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 DISP2A7MBM2 1401 aa11.91□□□□□ -0.5
PTPRF-203ENST00000372407 hCG_2014768A0A024R1R8 64 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 RSPH10B2B2RC85 870 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 DPYSL4O14531 572 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF263O14978 683 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 DEAF1O75398 565 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 RSPH10BP0C881 870 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 VHLP40337 213 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 CPA2P48052 419 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 CASP4P49662 377 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 CTCFP49711 727 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 SEC23AQ15436 765 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 EFHBQ8N7U6 833 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ATP8B4Q8TF62 1192 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 OTUB1Q96FW1 271 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 DCUN1D1Q96GG9 259 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 SEMA6BQ9H3T3 888 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 CDYLQ9Y232 598 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 SLIT3O75094 1523 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ZBTB22O15209 634 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 UBA3Q8TBC4 463 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 GPRASP2Q96D09 838 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 FAM111AQ96PZ2 611 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 NAT9Q9BTE0 207 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 GID8Q9NWU2 228 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ERAP1Q9NZ08 941 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 OGTO15294 1046 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 GAS2O43903 313 aaKnown RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ZC3H11AO75152 810 aaKnown RBP eCLIP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 AASDHQ4L235 1098 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 SPDYAQ5MJ70 313 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 NLRP9Q7RTR0 991 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 CBWD2Q8IUF1 395 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC71Q8N4P6 559 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ZNF555Q8NEP9 628 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ATG4AQ8WYN0 398 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 FRMD8P1Q9BZ68 369 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 TMBIM4Q9HC24 238 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms