RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 A0A087X0T9 212 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 TRIM13O60858 407 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CD4P01730 458 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 PCNAP12004 261 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 AASDHQ4L235 1098 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 PPP1R18Q6NYC8 613 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ZSCAN18Q8TBC5 510 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 KRT35Q92764 455 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 AHCYL2Q96HN2 611 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CAMKK2Q96RR4 588 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 SLC24A3Q9HC58 644 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 MKL2Q9ULH7 1088 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 RGS5O15539 181 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ASS1P00966 412 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 PDGFRAP16234 1089 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ZNF177Q13360 481 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 MTMR2Q13614 643 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 PTK6Q13882 451 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 STILQ15468 1287 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 TTLL9Q3SXZ7 439 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 FUT11Q495W5 492 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 HLA-DQA1Q5Y7H0 255 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 TMEM154Q6P9G4 183 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 RIN2Q8WYP3 895 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 XPO6Q96QU8 1125 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CARD9Q9H257 536 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CPVLQ9H3G5 476 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ZNF304Q9HCX3 659 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 NEUROD4Q9HD90 331 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 EIF3LQ9Y262 564 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 PCDHA10Q9Y5I2 948 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 KIF1AQ12756 1690 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 TSC22D2O75157 780 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 DGKIO75912 1065 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 MBL2P11226 248 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 FGFR4P22455 802 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 YWHABP31946 246 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CSNK2BP67870 215 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 STX3Q13277 289 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 LAYNQ6UX15 382 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 MTSS1LQ765P7 747 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 BTN2A1Q7KYR7 527 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CYP4Z1Q86W10 505 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 STRBPQ96SI9 672 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ZCCHC17Q9NP64 241 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ATP6V1HQ9UI12 483 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 XPO7Q9UIA9 1087 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 AIM2O14862 343 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 NEK10Q6ZWH5 1172 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 OTOAQ7RTW8 1153 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CCDC103Q8IW40 242 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ECSITQ9BQ95 431 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 EIF2AK1Q9BQI3 630 aaKnown RBP10.6□□□□□ -0.71
CLIP1-202ENST00000358808 ADAM33Q9BZ11 813 aa10.6□□□□□ -0.71
CLIP1-202ENST00000358808 CDHR2Q9BYE9 1310 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 NUDT14O95848 222 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TRIM49P0CI25 452 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TRIM49CP0CI26 452 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 SREBF2Q12772 1141 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 PGS1Q32NB8 556 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 EFL1Q7Z2Z2 1120 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 RCOR2Q8IZ40 523 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 CARNMT1Q8N4J0 409 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 UXS1Q8NBZ7 420 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 L3MBTL3Q96JM7 780 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 FAR2Q96K12 515 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 CHST12Q9NRB3 414 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 ABI2Q9NYB9 513 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TRMT6Q9UJA5 497 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 PADI4Q9UM07 663 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 CYP26A1O43174 497 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 DLGAP3O95886 979 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 STAG3L1P0CL83 205 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 FDX1P10109 184 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 SERPINB1P30740 379 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 LIFRP42702 1097 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TGM3Q08188 693 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 PAN2Q504Q3 1202 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 CACHD1Q5VU97 1274 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 MACC1Q6ZN28 852 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 CCDC149Q6ZUS6 474 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 AIFM3Q96NN9 605 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 STK33Q9BYT3 514 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 HERC5Q9UII4 1024 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TMCC3Q9ULS5 477 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 LINC00854A0A1B0GVQ3 168 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 GMNCA6NCL1 334 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 AGRPO00253 132 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 STX7O15400 261 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 STRNO43815 780 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 GGPS1O95749 300 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 NPEPPSP55786 919 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 DDX47Q9H0S4 455 aaKnown RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 TRABDQ9H4I3 376 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 MARCOQ9UEW3 520 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-202ENST00000358808 COQ6Q9Y2Z9 468 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 FAM187AA6NFU0 413 aa10.59□□□□□ -0.71
CLIP1-202ENST00000358808 SOAT2O75908 522 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms