RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 TMEM59LQ9UK28 342 aa17.33■□□□□ 0.37
TPM1-201ENST00000267996 TSPAN16Q9UKR8 245 aa17.33■□□□□ 0.37
TPM1-201ENST00000267996 A8MXQ7 604 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 M0QYV0 167 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 CYB561D2O14569 222 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 GABRDO14764 452 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 CEP104O60308 925 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PFKMP08237 780 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 MAN1A1P33908 653 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 CLCNKBP51801 687 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PDCLQ13371 301 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 UPP1Q16831 310 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PPP1R26Q5T8A7 1209 aaPredicted RBP17.32■□□□□ 0.36
TPM1-201ENST00000267996 OSTM1Q86WC4 334 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 ADGRF2Q8IZF7 708 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 UBL4BQ8N7F7 174 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 RNF169Q8NCN4 708 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 KRT35Q92764 455 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 C18orf8Q96DM3 657 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 DDX27Q96GQ7 796 aaKnown RBP17.32■□□□□ 0.36
TPM1-201ENST00000267996 SNX25Q9H3E2 840 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 ANKZF1Q9H8Y5 726 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 WDR35Q9P2L0 1181 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 LCMT1Q9UIC8 334 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PCDHA3Q9Y5H8 950 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 CCDC66A2RUB6 948 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 SPOPO43791 374 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 NBNO60934 754 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 SETSIPP0DME0 302 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 H2AFXP16104 143 aaPredicted RBP17.32■□□□□ 0.36
TPM1-201ENST00000267996 PAX3P23760 479 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 LMO2P25791 158 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 C2orf54Q08AI8 447 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 ZNF268Q14587 947 aaPredicted RBP17.32■□□□□ 0.36
TPM1-201ENST00000267996 GOLGA7BQ2TAP0 167 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PLEKHG4Q58EX7 1191 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 DNAJC24Q6P3W2 148 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 ANKRD33Q7Z3H0 272 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 C3orf58Q8NDZ4 430 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 UBA3Q8TBC4 463 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 SENP8Q96LD8 212 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.32■□□□□ 0.368e-7■■■□□ 15.2
TPM1-201ENST00000267996 DNAI2Q9GZS0 605 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 EPC1Q9H2F5 836 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 DPEP3Q9H4B8 488 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 CACNG4Q9UBN1 327 aa17.32■□□□□ 0.36
TPM1-201ENST00000267996 PGRMC1O00264 195 aaKnown RBP17.31■□□□□ 0.36
TPM1-201ENST00000267996 HCRTO43612 131 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 COL6A1P12109 1028 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 MARCKSL1P49006 195 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 RPL7AP62424 266 aaKnown RBP17.31■□□□□ 0.36
TPM1-201ENST00000267996 TUSC3Q13454 348 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 CYP4A22Q5TCH4 519 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 TTC30AQ86WT1 665 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 XYLT1Q86Y38 959 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 TMEM86AQ8N2M4 240 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 DNAJC5GQ8N7S2 189 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 MCRS1Q96EZ8 462 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 ZNF333Q96JL9 665 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 TJP2Q9UDY2 1190 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 IP6K2Q9UHH9 426 aa17.31■□□□□ 0.36
TPM1-201ENST00000267996 TDRD15B5MCY1 1934 aaKnown RBP17.3■□□□□ 0.36
TPM1-201ENST00000267996 CASTOR2A6NHX0 329 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 SIGLEC16A6NMB1 481 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 CAPN15O75808 1086 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 GJB6O95452 261 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 POMCP01189 267 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 ERBB2P04626 1255 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 PDGFRBP09619 1106 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 WSCD1Q658N2 575 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 CD300LGQ6UXG3 332 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 SLC39A5Q6ZMH5 540 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 STK32AQ8WU08 396 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 SLC35F5Q8WV83 523 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 TNIP3Q96KP6 325 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 UROC1Q96N76 676 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 PAAF1Q9BRP4 392 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 PARD6BQ9BYG5 372 aa17.3■□□□□ 0.36
TPM1-201ENST00000267996 RBM12Q9NTZ6 932 aaKnown RBP17.3■□□□□ 0.36
TPM1-201ENST00000267996 PSMC1P62191 440 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 C1orf53Q5VUE5 145 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 GLB1LQ6UWU2 654 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 CTU1Q7Z7A3 348 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 SPATA18Q8TC71 538 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 RNPC3Q96LT9 517 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 TOX2Q96NM4 488 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 SLC4A5Q9BY07 1137 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 MIS12Q9H081 205 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 ELAC1Q9H777 363 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 FAM49BQ9NUQ9 324 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 RAB21Q9UL25 225 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 TARSL2A2RTX5 802 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 ENPP3O14638 875 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 PQBP1O60828 265 aaKnown RBP17.29■□□□□ 0.36
TPM1-201ENST00000267996 TUBBP07437 444 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 ZNF252P-AS1Q0IIN9 211 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 CLUL1Q15846 466 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 CLLU1OSQ5K130 101 aa17.29■□□□□ 0.36
TPM1-201ENST00000267996 FBXO38Q6PIJ6 1188 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms