RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ADGRA1Q86SQ6 560 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 PRPF39Q86UA1 669 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 SAMD3Q8N6K7 520 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 OR9Q1Q8NGQ5 310 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 ZDHHC15Q96MV8 337 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 MMTAG2Q9BU76 263 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 ZNF518BQ9C0D4 1074 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 PKD2L2Q9NZM6 624 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 LRRC10BA6NIK2 292 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 ARP10275 920 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 CACNB2Q08289 660 aaPredicted RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 SV2CQ496J9 727 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 C6orf10Q5SRN2 563 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 MFSD14CQ5VZR4 134 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 STYK1Q6J9G0 422 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 PABPC5Q96DU9 382 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 NAF1Q96HR8 494 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 FAM111AQ96PZ2 611 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 SLC38A7Q9NVC3 462 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 KIF17Q9P2E2 1029 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 PRKAG2Q9UGJ0 569 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 KIAA1257Q9ULG3 409 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 BAZ2BQ9UIF8 2168 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 PROSCO94903 275 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 PTENP60484 403 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 RBBP7Q16576 425 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 EARS2Q5JPH6 523 aaKnown RBP11.21□□□□□ -0.62
CD44-201ENST00000263398 NLRP9Q7RTR0 991 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 SZRD1Q7Z422 152 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 CCNJLQ8IV13 435 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 GFM2Q969S9 779 aaKnown RBP11.21□□□□□ -0.62
CD44-201ENST00000263398 ELMO2Q96JJ3 720 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 MAGEB18Q96M61 343 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 NAT9Q9BTE0 207 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 DNAJC6O75061 913 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 CCNG2Q16589 344 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 C11orf63Q6NUN7 778 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 TXNRD3Q86VQ6 643 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 EXD1Q8NHP7 514 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 TAS1R2Q8TE23 839 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 DUSP9Q99956 384 aaKnown RBP11.21□□□□□ -0.62
CD44-201ENST00000263398 DEFB129Q9H1M3 183 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 CASS4Q9NQ75 786 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 CHCHD3Q9NX63 227 aaKnown RBP11.21□□□□□ -0.62
CD44-201ENST00000263398 CDYLQ9Y232 598 aa11.21□□□□□ -0.62
CD44-201ENST00000263398 O00370 1275 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 NDUFS3O75489 264 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 ITGB3P05106 788 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 FDFT1P37268 417 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 CAP2P40123 477 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 VHLP40337 213 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 NAMPTP43490 491 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 GOLGA7BQ2TAP0 167 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 TMEM154Q6P9G4 183 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SLC30A9Q6PML9 568 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 AGBL3Q8NEM8 1001 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SLC7A14Q8TBB6 771 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 THAP11Q96EK4 314 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 DACH2Q96NX9 599 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SH3GL3Q99963 347 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 DDX50Q9BQ39 737 aaKnown RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 TLR10Q9BXR5 811 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 FARP1Q9Y4F1 1045 aaPredicted RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 AKAP10O43572 662 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 NQO1P15559 274 aaKnown RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 ANGEL2Q5VTE6 544 aaKnown RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 SUGP1Q8IWZ8 645 aaKnown RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 ELMOD1Q8N336 334 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 KATNAL1Q9BW62 490 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 TEX12Q9BXU0 123 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 HEY2Q9UBP5 337 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 FER1L4A9Z1Z3 1794 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 APOA4P06727 396 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 KRT16P08779 473 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 GNL1P36915 607 aaPredicted RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 PNPLA4P41247 253 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SCTRP47872 440 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 CPA2P48052 419 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SV2AQ7L0J3 742 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 IFNEQ86WN2 208 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 GANCQ8TET4 914 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 ACSF2Q96CM8 615 aaPredicted RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 CATSPERBQ9H7T0 1116 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 AFF4Q9UHB7 1163 aaKnown RBP11.2□□□□□ -0.62
CD44-201ENST00000263398 SPATA31A5Q5VU36 1347 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 SPATA31A7Q8IWB4 1347 aa11.2□□□□□ -0.62
CD44-201ENST00000263398 CYP2C9P11712 490 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TARSP26639 723 aaKnown RBP11.19□□□□□ -0.62
CD44-201ENST00000263398 COPAP53621 1224 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ACCSLQ4AC99 568 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 C2CD6Q53TS8 623 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 C4orf19Q8IY42 314 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SHCBP1Q8NEM2 672 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 KDM4CQ9H3R0 1056 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 MYOZ2Q9NPC6 264 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 POLLQ9UGP5 575 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 TMX2Q9Y320 296 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 SLC30A1Q9Y6M5 507 aa11.19□□□□□ -0.62
CD44-201ENST00000263398 ADGRB2O60241 1585 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms