RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 EXOC1LA0A1B0GW35 172 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 TTLL13PA6NNM8 815 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 FARP2O94887 1054 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 ATF7P17544 494 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 UBA1P22314 1058 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 BRD2P25440 801 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 TNFSF9P41273 254 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 MYL6P60660 151 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 GPS1Q13098 491 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 TMED2Q15363 201 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SGSM1Q2NKQ1 1148 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 WDR72Q3MJ13 1102 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SEZ6Q53EL9 994 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SEPT14Q6ZU15 432 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SLC35B2Q8TB61 432 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 MRPL4Q9BYD3 311 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 NOD2Q9HC29 1040 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SENP1Q9P0U3 644 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 C3orf70A6NLC5 250 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 ABLIM1O14639 778 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 EDNRBP24530 442 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SKIV2L2P42285 1042 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SURF1Q15526 300 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 DUOXA2Q1HG44 320 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 DALRD3Q5D0E6 543 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 NOL9Q5SY16 702 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 TXNRD3NBQ6F5E7 133 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 GPAT2Q6NUI2 795 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 DCUN1D2Q6PH85 259 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 SLC16A10Q8TF71 515 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 ACO2Q99798 780 aaKnown RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 FRMD8P1Q9BZ68 369 aaPredicted RBP13.47□□□□□ -0.25
LINC00540-203ENST00000631321 MTMR12Q9C0I1 747 aa13.47□□□□□ -0.25
LINC00540-203ENST00000631321 MYH9P35579 1960 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 OGTO15294 1046 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 HARSP12081 509 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 ALADP13716 330 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 ETS1P14921 441 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 ALDH5A1P51649 535 aaPredicted RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 CNTN2Q02246 1040 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 FAM160B1Q5W0V3 765 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 ASRGL1Q7L266 308 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 TBC1D1Q86TI0 1168 aaPredicted RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 FITM2Q8N6M3 262 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 PRPF31Q8WWY3 499 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 KLHL14Q9P2G3 628 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 SLC24A2Q9UI40 661 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 MCM8Q9UJA3 840 aa13.46□□□□□ -0.25
LINC00540-203ENST00000631321 CPSF3Q9UKF6 684 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 SMG5Q9UPR3 1016 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.46□□□□□ -0.25
LINC00540-203ENST00000631321 NF2P35240 595 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 STAT5BP51692 787 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 MGAT5Q09328 741 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 FASTKD3Q14CZ7 662 aaKnown RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 ZKSCAN8Q15776 578 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 TAZQ16635 292 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 SH3D19Q5HYK7 790 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 ERICH1Q86X53 443 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 TFAP2BQ92481 460 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 PRCCQ92733 491 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 KLRG1Q96E93 195 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 RMDN2Q96LZ7 410 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 ARHGEF3Q9NR81 526 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 FETUBQ9UGM5 382 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 STRIP2Q9ULQ0 834 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 STARD13Q9Y3M8 1113 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 FARP1Q9Y4F1 1045 aaPredicted RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 AFG3L2Q9Y4W6 797 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 SSC5DA1L4H1 1573 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 ASPAP45381 313 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 KCNJ2P63252 427 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 SLC25A11Q02978 314 aaKnown RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 ZFYVE27Q5T4F4 411 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 IER5Q5VY09 327 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 CENPUQ71F23 418 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 APOBEC3FQ8IUX4 373 aaKnown RBP13.45□□□□□ -0.26
LINC00540-203ENST00000631321 FNIP1Q8TF40 1166 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 TCP11Q8WWU5 503 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 XYLT2Q9H1B5 865 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 LHX5Q9H2C1 402 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 TRABDQ9H4I3 376 aa13.45□□□□□ -0.26
LINC00540-203ENST00000631321 A0A1B0GUA9 196 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 LRRD1A4D1F6 860 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 HOXC6P09630 235 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 CCNB1P14635 433 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 MAP2K2P36507 400 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 NEDD9Q14511 834 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 PCGF5Q86SE9 256 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 ZBTB33Q86T24 672 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 ANKLE1Q8NAG6 615 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 FAM167AQ96KS9 214 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 PITPNM3Q9BZ71 974 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 SSU72Q9NP77 194 aaKnown RBP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 GGT7Q9UJ14 662 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 CEP83Q9Y592 693 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 SIGLEC16A6NMB1 481 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 IGF2BP3O00425 579 aaKnown RBP eCLIP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 GAS2O43903 313 aaKnown RBP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 PROZP22891 400 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms