RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 TSPYL2Q9H2G4 693 aaPredicted RBP12.45□□□□□ -0.42
VRK3-223ENST00000601341 SLITRK6Q9H5Y7 841 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 TMEM39AQ9NV64 488 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 SLC38A7Q9NVC3 462 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 GOLGA6AQ9NYA3 693 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 TBX21Q9UL17 535 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 STXBP5LQ9Y2K9 1186 aa12.45□□□□□ -0.42
VRK3-223ENST00000601341 KIAA0100Q14667 2235 aaKnown RBP12.45□□□□□ -0.42
VRK3-223ENST00000601341 UMODL1Q5DID0 1318 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 ARL5CA6NH57 179 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 MEIS3P2A8K0S8 358 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 DDX3XO00571 662 aaKnown RBP eCLIP12.44□□□□□ -0.423e-12■■□□□ 11.9
VRK3-223ENST00000601341 PTGESO14684 152 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 THP07101 528 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 GLI1P08151 1106 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 CLTBP09497 229 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 KRT5P13647 590 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 ATF7P17544 494 aaPredicted RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 MLH1P40692 756 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 FAM189BP81408 668 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 LRRC26Q2I0M4 334 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 ZNF598Q86UK7 904 aaKnown RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 LRRC52Q8N7C0 313 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 C18orf25Q96B23 403 aaPredicted RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 HES6Q96HZ4 224 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 ZFP42Q96MM3 310 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 PPP1R10Q96QC0 940 aaKnown RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 PSMB7Q99436 277 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 NAP1L3Q99457 506 aaPredicted RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 PPP1R12CQ9BZL4 782 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 ISCUQ9H1K1 167 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 RSAD1Q9HA92 442 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 RNF19AQ9NV58 838 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 NXF1Q9UBU9 619 aaKnown RBP12.44□□□□□ -0.42
VRK3-223ENST00000601341 TUBGCP4Q9UGJ1 667 aa12.44□□□□□ -0.42
VRK3-223ENST00000601341 CYP26A1O43174 497 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 CXCL10P02778 98 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 CYP2C18P33260 490 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 NOP2P46087 812 aaKnown RBP12.43□□□□□ -0.42
VRK3-223ENST00000601341 CCL23P55773 120 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 BPIFB4P59827 614 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 YWHAEP62258 255 aaKnown RBP12.43□□□□□ -0.42
VRK3-223ENST00000601341 SKOR1P84550 965 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 C9orf57Q5W0N0 161 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 PEX26Q7Z412 305 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 GSTCDQ8NEC7 633 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 SEC14L1Q92503 715 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 SCLYQ96I15 445 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 MS4A14Q96JA4 679 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 WNT8AQ9H1J5 351 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 CITO14578 2027 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 PIRO00625 290 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 KCNK3O14649 394 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 ACO1P21399 889 aaKnown RBP12.43□□□□□ -0.42
VRK3-223ENST00000601341 PNPLA4P41247 253 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 ASPAP45381 313 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 SLC7A5Q01650 507 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 SPDYCQ5MJ68 293 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 LRIG3Q6UXM1 1119 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 MAATS1Q7Z4T9 603 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 NT5DC3Q86UY8 548 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 RHOT2Q8IXI1 618 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 OLIG1Q8TAK6 271 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 LINC01599Q8WXQ3 324 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 ZNF560Q96MR9 790 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 BCO2Q9BYV7 579 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 FAM124BQ9H5Z6 455 aaPredicted RBP12.43□□□□□ -0.42
VRK3-223ENST00000601341 CYP3A43Q9HB55 503 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 EPB41L5Q9HCM4 733 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 CNTN6Q9UQ52 1028 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 PCDHB4Q9Y5E5 795 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 ANK1P16157 1881 aa12.43□□□□□ -0.42
VRK3-223ENST00000601341 ANKRD62A6NC57 917 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 SRRM3A6NNA2 597 aaPredicted RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 ENPP3O14638 875 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 IBSPP21815 317 aaPredicted RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 LRPAP1P30533 357 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 RFC2P35250 354 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 HSPA9P38646 679 aaKnown RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 SCNN1GP51170 649 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 GALCP54803 685 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 GUCY2DQ02846 1103 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 SOX4Q06945 474 aaPredicted RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 TMEM270Q6UE05 265 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 GLB1LQ6UWU2 654 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 GSPT2Q8IYD1 628 aaKnown RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 TMEM130Q8N3G9 435 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 TTC39CQ8N584 583 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 CCDC26Q8TAB7 109 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 CTNNBL1Q8WYA6 563 aaPredicted RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 LRRC45Q96CN5 670 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 KRT12Q99456 494 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 CARD9Q9H257 536 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 ELAC1Q9H777 363 aaKnown RBP12.42□□□□□ -0.42
VRK3-223ENST00000601341 CISHQ9NSE2 258 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 TMEM161AQ9NX61 479 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 AMFRQ9UKV5 643 aa12.42□□□□□ -0.42
VRK3-223ENST00000601341 INPPL1O15357 1258 aa12.41□□□□□ -0.42
VRK3-223ENST00000601341 WEE2P0C1S8 567 aa12.41□□□□□ -0.42
VRK3-223ENST00000601341 CYP11B1P15538 503 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms