RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GHRHRQ02643 423 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 PIGHQ14442 188 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 TFDP3Q5H9I0 405 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 EFHC2Q5JST6 749 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 RNASEH2BQ5TBB1 312 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 PPIL6Q8IXY8 311 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 TTC13Q8NBP0 860 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 RSAD2Q8WXG1 361 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 LPAR1Q92633 364 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 NKD2Q969F2 451 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 FAM84AQ96KN4 292 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 GLIS2Q9BZE0 524 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 FETUBQ9UGM5 382 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ANKRD31Q8N7Z5 1873 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 H0Y3Z8 333 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 PPP1R12AO14974 1030 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 TM9SF1O15321 606 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ACO1P21399 889 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ACOT2P49753 483 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 NOP14P78316 857 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 MRPS35P82673 323 aaKnown RBP11.33□□□□□ -0.6
CCDC40-207ENST00000572253 ATP13A4Q4VNC1 1196 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM35BQ8NCS4 154 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 FLAD1Q8NFF5 587 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 DEPTORQ8TB45 409 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 MCUR1Q96AQ8 359 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 PXMP2Q9NR77 195 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 LRRC42Q9Y546 428 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 IVNS1ABPQ9Y6Y0 642 aa11.33□□□□□ -0.6
CCDC40-207ENST00000572253 WDR91A4D1P6 747 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM191CA6NGB0 347 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 GOLGA8SH3BPF8 625 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 GOLGA8MH3BSY2 632 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM191BP0C7N4 346 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TPBGLP0DKB5 382 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 ETS1P14921 441 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 CCDC62Q6P9F0 684 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 VPS52Q8N1B4 723 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 GLIS1Q8NBF1 620 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 GPRASP2Q96D09 838 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MCEEQ96PE7 176 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 FRMD8P1Q9BZ68 369 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 NKX1-2Q9UD57 310 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 DCTN4Q9UJW0 460 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 A0A1W2PPM1 405 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SMAPO00193 183 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TRAFD1O14545 582 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TYROBPO43914 113 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MT-ND3P03897 115 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 GNAZP19086 355 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 CDC25CP30307 473 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SWSAP1Q6NVH7 229 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MTDHQ86UE4 582 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 APLFQ8IW19 511 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 ENDOVQ8N8Q3 282 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 DNAJC9Q8WXX5 260 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MSTO1Q9BUK6 570 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 PHACTR1Q9C0D0 580 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 ARHGAP28Q9P2N2 729 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 hCG_1818297A0A087WSY0 165 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MAFGO15525 162 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 LSM8O95777 96 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 PTPN7P35236 360 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 NLRP11P59045 1033 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 CLDN10P78369 228 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SP4Q02446 784 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 HADHQ16836 314 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 PDIK1LQ8N165 341 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 ARHGAP24Q8N264 748 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SLC7A6OSQ96CW6 309 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 CGRRF1Q99675 332 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 TMEM121Q9BTD3 319 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 MAK16Q9BXY0 300 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 SPATS2LQ9NUQ6 558 aaKnown RBP11.32□□□□□ -0.6
CCDC40-207ENST00000572253 LNPEPQ9UIQ6 1025 aa11.32□□□□□ -0.6
CCDC40-207ENST00000572253 A0A0G2JND7 137 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ABLIM1O14639 778 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 STAM2O75886 525 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ATP6V1C1P21283 382 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 MMP8P22894 467 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 PEX19P40855 299 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 CTCFP49711 727 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ARFIP2P53365 341 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 SPDYE2Q495Y8 402 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 RSBN1LQ6PCB5 846 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ZNF606Q8WXB4 792 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 STMN2Q93045 179 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 PAFAH2Q99487 392 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ADAM33Q9BZ11 813 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 VPS11Q9H270 941 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 VCXQ9H320 206 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 SLC38A10Q9HBR0 1119 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 CYP26B1Q9NR63 512 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 IQANK1A0A1B0GTG1 560 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 CFHP08603 1231 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 ADRA1DP25100 572 aa11.31□□□□□ -0.6
CCDC40-207ENST00000572253 RPL7AP62424 266 aaKnown RBP11.31□□□□□ -0.6
CCDC40-207ENST00000572253 NCOA4Q13772 614 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms