RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 METTL23Q86XA0 190 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 THEM5Q8N1Q8 247 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 ZSCAN18Q8TBC5 510 aaPredicted RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 C2orf15Q8WU43 125 aaKnown RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 ATOH1Q92858 354 aaPredicted RBP16.01■□□□□ 0.15
CLN3-213ENST00000565047 LPIN3Q9BQK8 851 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 ACBD6Q9BR61 282 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 FOXQ1Q9C009 403 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 KIAA1586Q9HCI6 787 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 ZFP14Q9HCL3 533 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 SLC39A2Q9NP94 309 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 SIT1Q9Y3P8 196 aa16.01■□□□□ 0.15
CLN3-213ENST00000565047 A0A1B0GVL5 298 aa16■□□□□ 0.15
CLN3-213ENST00000565047 A0A1W2PRU2 124 aa16■□□□□ 0.15
CLN3-213ENST00000565047 KANSL1LA0AUZ9 987 aa16■□□□□ 0.15
CLN3-213ENST00000565047 LRRN2O75325 713 aa16■□□□□ 0.15
CLN3-213ENST00000565047 CST3P01034 146 aaPredicted RBP16■□□□□ 0.15
CLN3-213ENST00000565047 DCNP07585 359 aaKnown RBP16■□□□□ 0.15
CLN3-213ENST00000565047 PFKFB1P16118 471 aa16■□□□□ 0.15
CLN3-213ENST00000565047 HMGA1P17096 107 aaKnown RBP16■□□□□ 0.15
CLN3-213ENST00000565047 WEE1P30291 646 aa16■□□□□ 0.15
CLN3-213ENST00000565047 VIPR2P41587 438 aa16■□□□□ 0.15
CLN3-213ENST00000565047 PFKPQ01813 784 aa16■□□□□ 0.15
CLN3-213ENST00000565047 STK4Q13043 487 aa16■□□□□ 0.15
CLN3-213ENST00000565047 PSMD6Q15008 389 aa16■□□□□ 0.15
CLN3-213ENST00000565047 SNRNP35Q16560 246 aaKnown RBP16■□□□□ 0.15
CLN3-213ENST00000565047 DUOXA2Q1HG44 320 aa16■□□□□ 0.15
CLN3-213ENST00000565047 TMEM150AQ86TG1 271 aa16■□□□□ 0.15
CLN3-213ENST00000565047 WDR49Q8IV35 697 aa16■□□□□ 0.15
CLN3-213ENST00000565047 TOP6BLQ8N6T0 577 aa16■□□□□ 0.15
CLN3-213ENST00000565047 KIAA0895Q8NCT3 520 aa16■□□□□ 0.15
CLN3-213ENST00000565047 SPATA18Q8TC71 538 aa16■□□□□ 0.15
CLN3-213ENST00000565047 SPPL2BQ8TCT7 592 aa16■□□□□ 0.15
CLN3-213ENST00000565047 ZNF516Q92618 1163 aa16■□□□□ 0.15
CLN3-213ENST00000565047 LRRC3BQ96PB8 259 aa16■□□□□ 0.15
CLN3-213ENST00000565047 OSBPL6Q9BZF3 934 aa16■□□□□ 0.15
CLN3-213ENST00000565047 GPR88Q9GZN0 384 aa16■□□□□ 0.15
CLN3-213ENST00000565047 TRPV5Q9NQA5 729 aa16■□□□□ 0.15
CLN3-213ENST00000565047 CLIC2O15247 247 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 HCRTO43612 131 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 CYP24A1Q07973 514 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 ANGPT1Q15389 498 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 SURF1Q15526 300 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 KNOP1Q1ED39 458 aaKnown RBP15.99■□□□□ 0.15
CLN3-213ENST00000565047 DPH6Q7L8W6 267 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 TRAPPC11Q7Z392 1133 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 MFSD6LQ8IWD5 586 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 NELFCDQ8IXH7 590 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 MAML2Q8IZL2 1156 aaPredicted RBP15.99■□□□□ 0.15
CLN3-213ENST00000565047 TMEM86AQ8N2M4 240 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 RDH13Q8NBN7 331 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 PLEKHO2Q8TD55 490 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 KBTBD7Q8WVZ9 684 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 DNASE1L2Q92874 299 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 SHDQ96IW2 340 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 DMAC2Q9NW81 257 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 SNX9Q9Y5X1 595 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 TCHHQ07283 1943 aa15.99■□□□□ 0.15
CLN3-213ENST00000565047 TMEM191BP0C7N4 346 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 PSMC3P17980 439 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 CD72P21854 359 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 FCHO2Q0JRZ9 810 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 BFSP1Q12934 665 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 GRM2Q14416 872 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 CCDC142Q17RM4 750 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 MGAT5BQ3V5L5 792 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 INTS6LQ5JSJ4 861 aaKnown RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 FAM171BQ6P995 826 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 DCP1BQ8IZD4 617 aaKnown RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 XXYLT1Q8NBI6 393 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 CLDN23Q96B33 292 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 HPDLQ96IR7 371 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 ANKRD36BP1Q96IX9 119 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 SEPT5Q99719 369 aaPredicted RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 TRMT61BQ9BVS5 477 aaKnown RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 KCTD10Q9H3F6 313 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 LTB4R2Q9NPC1 389 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 HEBP1Q9NRV9 189 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 DDX43Q9NXZ2 648 aaKnown RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 CGNQ9P2M7 1197 aaKnown RBP15.98■□□□□ 0.15
CLN3-213ENST00000565047 NME7Q9Y5B8 376 aa15.98■□□□□ 0.15
CLN3-213ENST00000565047 MYBPHLA2RUH7 354 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 HEPACAM2A8MVW5 462 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 STK25O00506 426 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 HUS1O60921 280 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 F11P03951 625 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 KRT19P08727 400 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ACAT1P24752 427 aaKnown RBP15.97■□□□□ 0.15
CLN3-213ENST00000565047 LMO2P25791 158 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 TARSP26639 723 aaKnown RBP15.97■□□□□ 0.15
CLN3-213ENST00000565047 GABRR2P28476 465 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 GPR15P49685 360 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 NDUFA8P51970 172 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 CLDN10P78369 228 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 KRT85P78386 507 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 KMT5BQ4FZB7 885 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ITIH5Q86UX2 942 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 ARID3BQ8IVW6 561 aaPredicted RBP15.97■□□□□ 0.15
CLN3-213ENST00000565047 CEP57L1Q8IYX8 460 aa15.97■□□□□ 0.15
CLN3-213ENST00000565047 GIPC2Q8TF65 315 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms