RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 MMS22LQ6ZRQ5 1243 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 OTUD6AQ7L8S5 288 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 RASSF3Q86WH2 238 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 PDILTQ8N807 584 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 KREMEN2Q8NCW0 462 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 VPS37AQ8NEZ2 397 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 MAFAQ8NHW3 353 aaPredicted RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 ETNPPLQ8TBG4 499 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 PPP1R13LQ8WUF5 828 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 BRI3BPQ8WY22 251 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 LARP4BQ92615 738 aaKnown RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 HAS1Q92839 578 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 TRMT2BQ96GJ1 504 aaKnown RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 COX4I2Q96KJ9 171 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 INPP4AQ96PE3 977 aaPredicted RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 TAAR9Q96RI9 348 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 C7orf25Q9BPX7 421 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 BPIFA3Q9BQP9 254 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 TIPINQ9BVW5 301 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 PANK2Q9BZ23 570 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 GRPEL1Q9HAV7 217 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 AAASQ9NRG9 546 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 KCNH7Q9NS40 1196 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 BTBD7Q9P203 1132 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 DDX20Q9UHI6 824 aaKnown RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 GPR55Q9Y2T6 319 aaPredicted RBP5.61□□□□□ -1.51
LDLR-209ENST00000558528 RPS6KL1Q9Y6S9 549 aa5.61□□□□□ -1.51
LDLR-209ENST00000558528 SIPA1L1O43166 1804 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 FSD2A1L4K1 749 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 SLC15A5A6NIM6 579 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 FAM227AF5H4B4 570 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 C2CD2LO14523 706 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 IKBKBO14920 756 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 ADAMTS3O15072 1205 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 AXIN1O15169 862 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 NKRFO15226 690 aaKnown RBP eCLIP5.6□□□□□ -1.51
LDLR-209ENST00000558528 EDIL3O43854 480 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 TLR2O60603 784 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 LYPLA2O95372 231 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 CKMP06732 381 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 TPM3P06753 285 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 ITGB5P18084 799 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 MX2P20592 715 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 SCP2P22307 547 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 EDNRBP24530 442 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 CD68P34810 354 aaPredicted RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 ALDH5A1P51649 535 aaPredicted RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 ADKP55263 362 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 GALEQ14376 348 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 KIF22Q14807 665 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 KARSQ15046 597 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 IL17AQ16552 155 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PRSS53Q2L4Q9 553 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 BROXQ5VW32 411 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 CWF19L1Q69YN2 538 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 NCAPH2Q6IBW4 605 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 MIS18BP1Q6P0N0 1132 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 KCNT2Q6UVM3 1135 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 STXBP4Q6ZWJ1 553 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 MIER3Q7Z3K6 550 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PLEKHH3Q7Z736 793 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 DPP9Q86TI2 863 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 ALYREFQ86V81 257 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 CCDC65Q8IXS2 484 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 TDHQ8IZJ6 230 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 MIER2Q8N344 545 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 FAM133AQ8N9E0 248 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 ANKRD20A12PQ8NF67 263 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 DNAJB8Q8NHS0 232 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PCDH19Q8TAB3 1148 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 SPATA20Q8TB22 786 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 NUDT8Q8WV74 236 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 RAD54LQ92698 747 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 DIO2Q92813 273 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 COPS5Q92905 334 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 ATP6V0A1Q93050 837 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 FBXW5Q969U6 566 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 LENG9Q96B70 501 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PGBD4Q96DM1 585 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 CCDC43Q96MW1 224 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 ACAP3Q96P50 834 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 EIF2AK1Q9BQI3 630 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 FUCA2Q9BTY2 467 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 INO80BQ9C086 356 aaPredicted RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 AGO4Q9HCK5 861 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 CYP4F12Q9HCS2 524 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 SSU72Q9NP77 194 aaKnown RBP5.6□□□□□ -1.51
LDLR-209ENST00000558528 VTA1Q9NP79 307 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PCDHA5Q9Y5H7 936 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 PCDHA10Q9Y5I2 948 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 CDK5RAP2Q96SN8 1893 aa5.6□□□□□ -1.51
LDLR-209ENST00000558528 TRBV23OR9-2A0A075B6M9 112 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 BICDL2A1A5D9 508 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 CFAP69A5D8W1 941 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 MEGF11A6BM72 1044 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 GOLGA6L6A8MZA4 724 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 PRRT4C9JH25 899 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 FAM47E-STBD1D6RA91 191 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 F5H423 210 aaPredicted RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 TPP1O14773 563 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms