RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CEP78Q5JTW2 689 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 SLC2A7Q6PXP3 512 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 ZNF517Q6ZMY9 492 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 LHFPL2Q6ZUX7 228 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 WDR53Q7Z5U6 358 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 TECPR1Q7Z6L1 1165 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 TTC7BQ86TV6 843 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 KLHDC4Q8TBB5 520 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 RGMAQ96B86 450 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 NELL2Q99435 816 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 VKORC1Q9BQB6 163 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 SH2D3AQ9BRG2 576 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 QTRT1Q9BXR0 403 aaKnown RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 DKK3Q9UBP4 350 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 TBX22Q9Y458 520 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 MRFAP1Q9Y605 127 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 RAD54BQ9Y620 910 aa3.58□□□□□ -1.84
VPS13C-205ENST00000558088 CFAP20Q9Y6A4 193 aaKnown RBP3.58□□□□□ -1.84
VPS13C-205ENST00000558088 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 CCDC154A6NI56 674 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 TISP43B9A030 160 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 PRRT4C9JH25 899 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 INSIG1O15503 277 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 XPOTO43592 962 aaKnown RBP3.57□□□□□ -1.84
VPS13C-205ENST00000558088 TLR5O60602 858 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 DNAJB5O75953 348 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 ONECUT2O95948 504 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 GNAI2P04899 355 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 KIF23Q02241 960 aaPredicted RBP3.57□□□□□ -1.84
VPS13C-205ENST00000558088 IL10RAQ13651 578 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 HABP2Q14520 560 aaPredicted RBP3.57□□□□□ -1.84
VPS13C-205ENST00000558088 AWAT2Q6E213 333 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 TAF2Q6P1X5 1199 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 SLC4A10Q6U841 1118 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 PRSS3P2Q8NHM4 247 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 PRSS22Q9GZN4 317 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 VPS16Q9H269 839 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 SMOC2Q9H3U7 446 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 SLAMF7Q9NQ25 335 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 ETAA1Q9NY74 926 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 CNTNAP2Q9UHC6 1331 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 MCM8Q9UJA3 840 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 TUBD1Q9UJT1 453 aa3.57□□□□□ -1.84
VPS13C-205ENST00000558088 TMA7Q9Y2S6 64 aaKnown RBP3.57□□□□□ -1.84
VPS13C-205ENST00000558088 KLHL33A6NCF5 533 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 H3BNC9 293 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 SLC16A3O15427 465 aaKnown RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 HTRA2O43464 458 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 VPS4BO75351 444 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 TOP3BO95985 862 aaKnown RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 RARBP10826 455 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 CHRM3P20309 590 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 MALP21145 153 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 C5AR1P21730 350 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 LPOP22079 712 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 CYP2C18P33260 490 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 GCLCP48506 637 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 FOXG1P55316 489 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 C3orf36Q3SXR2 165 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 ZNF260Q3ZCT1 412 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 KLHL22Q53GT1 634 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 PCID2Q5JVF3 399 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 SFRP4Q6FHJ7 346 aaPredicted RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 MIS18BP1Q6P0N0 1132 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 KRT26Q7Z3Y9 468 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 PNLDC1Q8NA58 520 aaKnown RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 JADE3Q92613 823 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 DDX17Q92841 729 aaKnown RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 KAT5Q92993 513 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 REPS1Q96D71 796 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 ASB2Q96Q27 587 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 PUS7LQ9H0K6 701 aaKnown RBP3.56□□□□□ -1.84
VPS13C-205ENST00000558088 TMX1Q9H3N1 280 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 SH2B3Q9UQQ2 575 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 IPPQ9Y573 584 aa3.56□□□□□ -1.84
VPS13C-205ENST00000558088 H0YIZ8 118 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 MYO1FO00160 1098 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 F2RL2O00254 374 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 PPM1DO15297 605 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 ARIH2O95376 493 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 NTN1O95631 604 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 NPSP0C0P6 89 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 FTH1P19P0C7X4 201 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 JUPP14923 745 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 PCSK6P29122 969 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CCKBRP32239 447 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 ARHGAP25P42331 645 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 PIK3CGP48736 1102 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 PDE1AP54750 535 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 HOXA4Q00056 320 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 RABEP1Q15276 862 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 TRIP6Q15654 476 aaKnown RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 UAP1L1Q3KQV9 507 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CERKLQ49MI3 558 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 KHDC1Q4VXA5 237 aaKnown RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 ICE2Q659A1 982 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 LAYNQ6UX15 382 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CRELD2Q6UXH1 353 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-205ENST00000558088 CATSPERGQ6ZRH7 1159 aa3.55□□□□□ -1.84
VPS13C-205ENST00000558088 GALNT16Q8N428 558 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms