RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZCWPW1Q9H0M4 648 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 SNX25Q9H3E2 840 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 PLCB1Q9NQ66 1216 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 CRTAC1Q9NQ79 661 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 TMLHEQ9NVH6 421 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 MTMR10Q9NXD2 777 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 FNIP2Q9P278 1114 aa13.7□□□□□ -0.22
SHMT2-227ENST00000557269 ARHGEF37A1IGU5 675 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 MYBPHLA2RUH7 354 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 A8MXQ7 604 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 CLASP2O75122 1294 aaKnown RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 CILPO75339 1184 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 VNN2O95498 520 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 CALCAP01258 141 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 PNMA6AP0CW24 399 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 UCHL3P15374 230 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 POU3F3P20264 500 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 IGFBP4P22692 258 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 TBXAS1P24557 533 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 LHX1P48742 406 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 RBM10P98175 930 aaKnown RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 ROR1Q01973 937 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 ARHGAP44Q17R89 818 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 ZNF394Q53GI3 561 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 TCEAL5Q5H9L2 206 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 SLC8B1Q6J4K2 584 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 PDXDC1Q6P996 788 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 SARM1Q6SZW1 724 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 PALB2Q86YC2 1186 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 THEM5Q8N1Q8 247 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 SPATA18Q8TC71 538 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 PCMTD1Q96MG8 357 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 ACBD6Q9BR61 282 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 BARX2Q9UMQ3 279 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-227ENST00000557269 SSX2IPQ9Y2D8 614 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 TRANK1O15050 2925 aa13.69□□□□□ -0.22
SHMT2-227ENST00000557269 SZT2Q5T011 3432 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 A0A1W2PQC6 194 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 WDR27A2RRH5 827 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 OR6C75A6NL08 312 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 SPATA31D3P0C874 917 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 KLRC2P26717 231 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 NRIP1P48552 1158 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 NDUFV1P49821 464 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 RAD23BP54727 409 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 POLR2FP61218 127 aaKnown RBP13.68□□□□□ -0.22
SHMT2-227ENST00000557269 HYAL1Q12794 435 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 RAB33AQ14088 237 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 DUSP6Q16828 381 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 UVSSAQ2YD98 709 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 INTS6LQ5JSJ4 861 aaKnown RBP13.68□□□□□ -0.22
SHMT2-227ENST00000557269 RNF19BQ6ZMZ0 732 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 SPATA31D4Q6ZUB0 917 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 ACOT1Q86TX2 421 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 VN1R2Q8NFZ6 395 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 SLC22A17Q8WUG5 538 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 SYT15Q9BQS2 421 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 EMILIN2Q9BXX0 1053 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 NSUN3Q9H649 340 aaKnown RBP13.68□□□□□ -0.22
SHMT2-227ENST00000557269 TLE6Q9H808 572 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 NLRC4Q9NPP4 1024 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.68□□□□□ -0.22
SHMT2-227ENST00000557269 LMCD1Q9NZU5 365 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 GTF3C4Q9UKN8 822 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 PCDHB4Q9Y5E5 795 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 MYO7AQ13402 2215 aa13.68□□□□□ -0.22
SHMT2-227ENST00000557269 FSD2A1L4K1 749 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 FOXN3O00409 490 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-227ENST00000557269 TGM5O43548 720 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 ABLIM3O94929 683 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 EPCAMP16422 314 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 PTPN1P18031 435 aaKnown RBP13.67□□□□□ -0.22
SHMT2-227ENST00000557269 CLCN4P51793 760 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 ZNF75DP51815 510 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 MFAP3P55082 362 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 BMS1Q14692 1282 aaKnown RBP13.67□□□□□ -0.22
SHMT2-227ENST00000557269 DRAP1Q14919 205 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-227ENST00000557269 SLC39A12Q504Y0 691 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 FAM171BQ6P995 826 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 LILRA6Q6PI73 481 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 TMEM270Q6UE05 265 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 UNC93AQ86WB7 457 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 GPIHBP1Q8IV16 184 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 CRYBG2Q8N1P7 616 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 C12orf29Q8N999 325 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 SLC4A11Q8NBS3 891 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 NEK11Q8NG66 645 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 SHC3Q92529 594 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 PGLYRP2Q96PD5 576 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 GAS2L1Q99501 681 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-227ENST00000557269 ZSWIM1Q9BR11 485 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 RHOBTB2Q9BYZ6 727 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 TRIM5Q9C035 493 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 CRISPLD1Q9H336 500 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 IGFLR1Q9H665 355 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 ACP6Q9NPH0 428 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 CDH9Q9ULB4 789 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 CNTN6Q9UQ52 1028 aa13.67□□□□□ -0.22
SHMT2-227ENST00000557269 PLXNA3P51805 1871 aa13.66□□□□□ -0.22
SHMT2-227ENST00000557269 LINC01565O15544 149 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms