RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 XKR4Q5GH76 650 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PRSS36Q5K4E3 855 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 STPG1Q5TH74 334 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 ERICH6BQ5W0A0 696 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 ALKBH2Q6NS38 261 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PSAPL1Q6NUJ1 521 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 UNQ6494/PRO21346Q6UXR6 183 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 LONP2Q86WA8 852 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 C4orf32Q8N8J7 132 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 C3orf58Q8NDZ4 430 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 KIFAP3Q92845 792 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 IRF7Q92985 503 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 RSPRY1Q96DX4 576 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PPP1R10Q96QC0 940 aaKnown RBP10.96□□□□□ -0.65
SCFD1-220ENST00000556486 POLR3BQ9NW08 1133 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-220ENST00000556486 MTRRQ9UBK8 725 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 SERTAD1Q9UHV2 236 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 LIMCH1Q9UPQ0 1083 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PHLPP2Q6ZVD8 1323 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 A0A1W2PRU2 124 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 ARHGEF35A5YM69 484 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 KCNK5O95279 499 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 SEC24AO95486 1093 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 MYL4P12829 197 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 PSMC3P17980 439 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 CLCNKBP51801 687 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 HMGN5P82970 282 aaKnown RBP10.95□□□□□ -0.66
SCFD1-220ENST00000556486 SHC2P98077 582 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 ROR1Q01973 937 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 FOXC1Q12948 553 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 EEF1DP3Q658K8 133 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 TXNDC11Q6PKC3 985 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 KBTBD6Q86V97 674 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 MAP4K3Q8IVH8 894 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 IGSF22Q8N9C0 903 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 DEPTORQ8TB45 409 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 ZFYVE19Q96K21 471 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 C8orf76Q96K31 380 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 DMRTB1Q96MA1 342 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 UROC1Q96N76 676 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 SLITRK6Q9H5Y7 841 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 CYP4F11Q9HBI6 524 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 TNFSF13BQ9Y275 285 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 BACE2Q9Y5Z0 518 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 DSPP15924 2871 aaKnown RBP10.95□□□□□ -0.66
SCFD1-220ENST00000556486 EML5Q05BV3 1969 aa10.95□□□□□ -0.66
SCFD1-220ENST00000556486 TM4SF5O14894 197 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ZNF263O14978 683 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 EXTL3O43909 919 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PRPF40AO75400 957 aaKnown RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 B3GAT3O94766 335 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 U2AF2P26368 475 aaKnown RBP eCLIP10.94□□□□□ -0.667e-8■■■■□ 20
SCFD1-220ENST00000556486 VARSP26640 1264 aaKnown RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ELF1P32519 619 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 MAPK8P45983 427 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 KPNA1P52294 538 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 EHHADHQ08426 723 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PON2Q15165 354 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 TEAD2Q15562 447 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 UPP1Q16831 310 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 TTC38Q5R3I4 469 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 NT5DC1Q5TFE4 455 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ATF7IP2Q5U623 682 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PKN3Q6P5Z2 889 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 CD300LGQ6UXG3 332 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ALKAL1Q6UXT8 129 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PDZD4Q76G19 769 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 APBB1IPQ7Z5R6 666 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 SPEM1Q8N4L4 309 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ZSCAN18Q8TBC5 510 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 CSGALNACT1Q8TDX6 532 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 DDX1Q92499 740 aaKnown RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 SMARCD2Q92925 531 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 IFT74Q96LB3 600 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 BHMT2Q9H2M3 363 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 C17orf75Q9HAS0 396 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PTPRHQ9HD43 1115 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 AVENQ9NQS1 362 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-220ENST00000556486 PPP4R2Q9NY27 417 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 STIM2Q9P246 746 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 SPAG17Q6Q759 2223 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 ATG2BQ96BY7 2078 aa10.94□□□□□ -0.66
SCFD1-220ENST00000556486 HEPACAM2A8MVW5 462 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 LAD1O00515 517 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 TRAPPC3O43617 180 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 FZD6O60353 706 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 MOSPD3O75425 235 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 NEFLP07196 543 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 PROZP22891 400 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 GRM5P41594 1212 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 NOVA1P51513 510 aaKnown RBP10.93□□□□□ -0.66
SCFD1-220ENST00000556486 CDR1P51861 262 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 GUCY1B3Q02153 619 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 ZNF174Q15697 407 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 STXBP5Q5T5C0 1151 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 SLC8B1Q6J4K2 584 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 ANKS3Q6ZW76 656 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 DAW1Q8N136 415 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 TMEM130Q8N3G9 435 aa10.93□□□□□ -0.66
SCFD1-220ENST00000556486 KCNN1Q92952 543 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms