RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 TNNC1P63316 161 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 NOP14P78316 857 aaKnown RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 POU4F2Q12837 409 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 GAS6Q14393 721 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 DRAP1Q14919 205 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 GPNMBQ14956 572 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 SUZ12Q15022 739 aaKnown RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 DBN1Q16643 649 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 ZNF667Q5HYK9 610 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 SPOPLQ6IQ16 392 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 ALKAL1Q6UXT8 129 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 CYP26C1Q6V0L0 522 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 AGMOQ6ZNB7 445 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 C16orf59Q7L2K0 433 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 ENOSF1Q7L5Y1 443 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 RTN4RL1Q86UN2 441 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 TMTC1Q8IUR5 882 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 FMNL3Q8IVF7 1028 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 ARHGEF19Q8IW93 802 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 BEND7Q8N7W2 519 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 C1orf127Q8N9H9 656 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 URGCPQ8TCY9 931 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 TAF4BQ92750 862 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 C18orf25Q96B23 403 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 VWCEQ96DN2 955 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 ZMAT2Q96NC0 199 aaKnown RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 GAS2L1Q99501 681 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 DNAJC7Q99615 494 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 NAA15Q9BXJ9 866 aaKnown RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 TTYH3Q9C0H2 523 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 CXCL16Q9H2A7 254 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 DEF6Q9H4E7 631 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 IL23AQ9NPF7 189 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 TIMMDC1Q9NPL8 285 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 TUBGCP4Q9UGJ1 667 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 FBXL5Q9UKA1 691 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 MYO6Q9UM54 1294 aa7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.12□□□□□ -1.27
CLTCL1-206ENST00000540896 SCN5AQ14524 2016 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 SIP14410 1827 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 LTBP2Q14767 1821 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 MEIS3P2A8K0S8 358 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 C9IYK1 514 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 FOXN3O00409 490 aaPredicted RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 PTGESO14684 152 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 IPO7O95373 1038 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 FGBP02675 491 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 F11P03951 625 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 PFKMP08237 780 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 CYP3A5P20815 502 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 TBXAS1P24557 533 aaPredicted RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 MSNP26038 577 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 SOX5P35711 763 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 YWHAEP62258 255 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 FAM189BP81408 668 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 GCNT1Q02742 428 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 RNASELQ05823 741 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 KLHL30Q0D2K2 578 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 CUL2Q13617 745 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 ZBTB6Q15916 424 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 WDR72Q3MJ13 1102 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 TDRD12Q587J7 1177 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 XKR4Q5GH76 650 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 CNKSR3Q6P9H4 555 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 PSRC1Q6PGN9 363 aaPredicted RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 ZNF365Q70YC5 407 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 OTOP2Q7RTS6 562 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 HELQQ8TDG4 1101 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 SYN2Q92777 582 aaPredicted RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 KAT5Q92993 513 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 CCDC42Q96M95 316 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 FAM193BQ96PV7 902 aaPredicted RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 MMS19Q96T76 1030 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 UBE2OQ9C0C9 1292 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 NIF3L1Q9GZT8 377 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 ELAC1Q9H777 363 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 TMEM161AQ9NX61 479 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 KANSL3Q9P2N6 904 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 SIX4Q9UIU6 781 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 PLAGL2Q9UPG8 496 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 NUB1Q9Y5A7 615 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 PCDHB4Q9Y5E5 795 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 BZW2Q9Y6E2 419 aaKnown RBP7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 TANC1Q9C0D5 1861 aa7.11□□□□□ -1.27
CLTCL1-206ENST00000540896 F8VZ95 297 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 ARHGAP6O43182 974 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 AKR1B10O60218 316 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 EFCAB14O75071 495 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 SERPING1P05155 500 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 WEE2P0C1S8 567 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 PNMA6AP0CW24 399 aaPredicted RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 FGFR1P11362 822 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 CD58P19256 250 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 RPL9P32969 192 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 CYLC1P35663 651 aaPredicted RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 PNPLA4P41247 253 aa7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 AFF1P51825 1210 aaKnown RBP7.1□□□□□ -1.27
CLTCL1-206ENST00000540896 JAM2P57087 298 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms