RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SLC25A41Q8N5S1 370 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 GIPC2Q8TF65 315 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 RPRD1AQ96P16 312 aaPredicted RBP14.77□□□□□ -0.05
USP3-204ENST00000540797 TRIM10Q9UDY6 481 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 MYPNQ86TC9 1320 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 SLITRK3O94933 977 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 ANP32DO95626 131 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 CD44P16070 742 aaKnown RBP14.77□□□□□ -0.05
USP3-204ENST00000540797 RAP1GAPP47736 663 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 BEX3Q00994 111 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 RBBP7Q16576 425 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 RAD9BQ6WBX8 426 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 NUDCD3Q8IVD9 361 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 TRPM5Q9NZQ8 1165 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 PAK5Q9P286 719 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 XPO7Q9UIA9 1087 aaKnown RBP14.77□□□□□ -0.05
USP3-204ENST00000540797 GTF3C4Q9UKN8 822 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 NDUFS3O75489 264 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 DNAJB2P25686 324 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 MYL6P60660 151 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 CDR2Q01850 454 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.76□□□□□ -0.05
USP3-204ENST00000540797 CYTH2Q99418 400 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TINF2Q9BSI4 451 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 SEMA6BQ9H3T3 888 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 MLXIPLQ9NP71 852 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.76□□□□□ -0.05
USP3-204ENST00000540797 ADCY3O60266 1144 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 BCAT1P54687 386 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ANKRD20A4Q4UJ75 823 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ANKRD20A8PQ5CZ79 823 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 FBXO47Q5MNV8 452 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ANKRD20A2Q5SQ80 823 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ANKRD20A1Q5TYW2 823 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 IPMKQ8NFU5 416 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 RMDN2Q96LZ7 410 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 KRT82Q9NSB4 513 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ZC3H7BQ9UGR2 993 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 TPX2Q9ULW0 747 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 HPSEQ9Y251 543 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 MTSS1O43312 755 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TBC1D12O60347 775 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 GGCXP38435 758 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TRIM68Q6AZZ1 485 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ZC3H15Q8WU90 426 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 OLFML3Q9NRN5 406 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 MYO1DO94832 1006 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 SYF2O95926 243 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 MAPTP10636 758 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 MAP4P27816 1152 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 EPHB3P54753 998 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 SLC27A1Q6PCB7 646 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 ZNF467Q7Z7K2 595 aaPredicted RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 PDLIM2Q96JY6 352 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 FAM118BQ9BPY3 351 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 DOLKQ9UPQ8 538 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TLR2O60603 784 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 OPHN1O60890 802 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 HIST1H2AGP0C0S8 130 aaPredicted RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 HIST1H2ADP20671 130 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 CCDC15Q0P6D6 951 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 PDAP1Q13442 181 aaKnown RBP14.76□□□□□ -0.05
USP3-204ENST00000540797 STAT4Q14765 748 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 POTEAQ6S8J7 498 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 MOB2Q70IA6 237 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TAS1R2Q8TE23 839 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 PTPRN2Q92932 1015 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 HIST1H2AHQ96KK5 128 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 HIST1H2AJQ99878 128 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 TRIM51Q9BSJ1 452 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 H2AFJQ9BTM1 129 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 LRRC1Q9BTT6 524 aa14.76□□□□□ -0.05
USP3-204ENST00000540797 F5H5T6 163 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 DCTN3O75935 186 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 RBP3P10745 1247 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 ITIH2P19823 946 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 CCZ1BP86790 482 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 CCZ1P86791 482 aaPredicted RBP14.75□□□□□ -0.05
USP3-204ENST00000540797 SP3Q02447 781 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 CRY2Q49AN0 593 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 FOPNLQ96NB1 174 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 CYP3A43Q9HB55 503 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 ARHGEF38Q9NXL2 777 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 ITGA11Q9UKX5 1188 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 AKAP5P24588 427 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 BTG3Q14201 252 aaPredicted RBP14.75□□□□□ -0.05
USP3-204ENST00000540797 NFE2Q16621 373 aaPredicted RBP14.75□□□□□ -0.05
USP3-204ENST00000540797 MDH1BQ5I0G3 518 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 ZNF410Q86VK4 478 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 RBM15Q96T37 977 aaKnown RBP eCLIP14.75□□□□□ -0.05
USP3-204ENST00000540797 CENPKQ9BS16 269 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 CINPQ9BW66 212 aaPredicted RBP14.75□□□□□ -0.05
USP3-204ENST00000540797 INTUQ9ULD6 942 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 LGALS2P05162 132 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 MAP3K7CLP57077 242 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 UGP2Q16851 508 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 NCLNQ969V3 563 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 GPR63Q9BZJ6 419 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 THAP2Q9H0W7 228 aa14.75□□□□□ -0.05
USP3-204ENST00000540797 TRPV2Q9Y5S1 764 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms