RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	GAGE12B	A1L429	117 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	GAGE12H	A6NDE8	117 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	GRM6	O15303	877 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	NCK2	O43639	380 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	STC2	O76061	302 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	CD1A	P06126	327 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	PTMA	P06454	111 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	CKB	P12277	381 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	MAN1A1	P33908	653 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	CCT5	P48643	541 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	PIK3CG	P48736	1102 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	RAP2B	P61225	183 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	TNFAIP2	Q03169	654 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	CALD1	Q05682	793 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	EMC10	Q5UCC4	262 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SPATA5	Q8NB90	893 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SECISBP2L	Q93073	1101 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	NEUROD6	Q96NK8	337 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SLC46A2	Q9BY10	475 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	KRTAP9-2	Q9BYQ4	174 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	hCG_1642624	A0A1W2PR95	340 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	KIAA0391	O15091	583 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	PHGDH	O43175	533 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	TLR5	O60602	858 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SOAT2	O75908	522 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	GNAI2	P04899	355 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	HLA-DOA	P06340	250 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	HSP90AA1	P07900	732 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	FAM163B	P0C2L3	166 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	GRK6	P43250	576 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	RABGGTB	P53611	331 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	RAB1A	P62820	205 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SIM2	Q14190	667 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SLC4A8	Q2Y0W8	1093 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	FAM209B	Q5JX69	171 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	LVRN	Q6Q4G3	990 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	MMS22L	Q6ZRQ5	1243 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	ZNF365	Q70YC5	407 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	RHOT2	Q8IXI1	618 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	MB21D1	Q8N884	522 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SCAMP4	Q969E2	229 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	VRK1	Q99986	396 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	BTBD1	Q9H0C5	482 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	RNPEP	Q9H4A4	650 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	ATP6V0A4	Q9HBG4	840 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	ABCF2	Q9UG63	623 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	SNX13	Q9Y5W8	968 aa		4.16	□□□□□ -1.74
CSMD3-210	ENST00000534172	DRGX	A6NNA5	263 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	F2RL2	O00254	374 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	GCSH	P23434	173 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	PRDX5	P30044	214 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	PIGF	Q07326	219 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	IZUMO3	Q5VZ72	239 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	FAM90A1	Q86YD7	464 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	MYCT1	Q8N699	235 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	PDILT	Q8N807	584 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	APIP	Q96GX9	242 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	PNKP	Q96T60	521 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	ARMT1	Q9H993	441 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	ZMAT3	Q9HA38	289 aa	Known RBP	4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	PIH1D1	Q9NWS0	290 aa	Known RBP	4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	EIF2B4	Q9UI10	523 aa	Known RBP	4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	ST6GALNAC2	Q9UJ37	374 aa		4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	ZCCHC11	Q5TAX3	1644 aa	Known RBP	4.15	□□□□□ -1.74
CSMD3-210	ENST00000534172	SYNM	O15061	1565 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	NT5C1B-RDH14	C9J2C7	533 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	C1QTNF3-AMACR	E9PGA6	284 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	LDHC	P07864	332 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	FPR1	P21462	350 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	MCC	P23508	829 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	ADAM17	P78536	824 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	HABP2	Q14520	560 aa	Predicted RBP	4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	ANKS6	Q68DC2	871 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	TLDC1	Q6P9B6	456 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	FOXR2	Q6PJQ5	311 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	XYLT1	Q86Y38	959 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	SLC35B2	Q8TB61	432 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	SLC35A4	Q96G79	324 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	C8orf49	Q96NF6	230 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	MOGAT1	Q96PD6	335 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	LRRC27	Q9C0I9	530 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	MRPL46	Q9H2W6	279 aa	Known RBP	4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	AGO4	Q9HCK5	861 aa	Known RBP	4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	SLC23A1	Q9UHI7	598 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	TPCN1	Q9ULQ1	816 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	RUVBL1	Q9Y265	456 aa	Known RBP	4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	SIGLEC1	Q9BZZ2	1709 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	KDM5C	P41229	1560 aa		4.15	□□□□□ -1.75
CSMD3-210	ENST00000534172	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	CENPJ	Q9HC77	1338 aa	Predicted RBP	4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	FHAD1	B1AJZ9	1412 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	ZMYM4	Q5VZL5	1548 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172		A0A087WV62	115 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172		A0A1W2PPL8	197 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	ISM1	B1AKI9	464 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	PRRT4	C9JH25	899 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	RNASET2	O00584	256 aa	Known RBP	4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	ZNF20	P17024	532 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	HK1	P19367	917 aa		4.14	□□□□□ -1.75
CSMD3-210	ENST00000534172	STT3A	P46977	705 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms