RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 FBXO47Q5MNV8 452 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CC2D1BQ5T0F9 858 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC35F1Q5T1Q4 408 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HECTD3Q5T447 861 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CFAP58Q5T655 872 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 THEMIS2Q5TEJ8 643 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MEX3CQ5U5Q3 659 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HECTD2Q5U5R9 776 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 AGAP9Q5VTM2 703 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRCH2Q5VUJ6 765 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRAMEF9Q5VWM5 478 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARMC3Q5W041 872 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NAIF1Q69YI7 327 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM200BQ69YZ2 307 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC9A4Q6AI14 798 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM68Q6AZZ1 485 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLFN12LQ6IEE8 588 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HIBCHQ6NVY1 386 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM180BQ6P0A1 224 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABHD17CQ6PCB6 329 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DRICH1Q6PGQ1 229 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 C11orf88Q6PI97 169 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 APOA5Q6Q788 366 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTHFD1LQ6UB35 978 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMCO3Q6UWJ1 677 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NPNTQ6UXI9 565 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC129Q6ZRS4 1044 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FRMD7Q6ZUT3 714 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ESPNLQ6ZVH7 1005 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEK10Q6ZWH5 1172 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP45Q70EL2 814 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GAREM2Q75VX8 874 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DOK3Q7L591 496 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAEAQ7L5Y9 396 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 OTOP1Q7RTM1 612 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 BHLHA9Q7RTU4 235 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 OVCH1Q7RTY7 1134 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 OVCH2Q7RTZ1 564 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR155Q7Z3F1 870 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GDF7Q7Z4P5 450 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBE2Q1Q7Z7E8 422 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DAAM2Q86T65 1068 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBC1D1Q86TI0 1168 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPAINQ86UA6 219 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LCA5Q86VQ0 697 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRIMA1Q86XR5 153 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTRH1Q86Y79 214 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DENND1CQ8IV53 801 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGEF19Q8IW93 802 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 BRSK2Q8IWQ3 736 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPAP2Q8IXW5 612 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SYTL1Q8IYJ3 562 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRAMD1CQ8IYS0 662 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 C16orf71Q8IYS4 520 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 UNC5BQ8IZJ1 945 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCAR2Q8N163 923 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NDUFAF2Q8N183 169 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALNT15Q8N3T1 639 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRR18Q8N4B5 295 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CAMKK1Q8N5S9 505 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ESX1Q8N693 406 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYCT1Q8N699 235 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARL6IP6Q8N6S5 226 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TEX9Q8N6V9 391 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF513Q8N8E2 541 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDYL2Q8N8U2 506 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IGSF22Q8N9C0 903 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANKRD53Q8N9V6 530 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF610Q8N9Z0 462 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF527Q8NB42 609 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCYOX1LQ8NBM8 494 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM145Q8NBT3 493 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CHST14Q8NCH0 376 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZBTB34Q8NCN2 500 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLRN3Q8NCR9 226 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MSANTD4Q8NCY6 345 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LSM14AQ8ND56 463 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZMIZ2Q8NF64 920 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MDGA1Q8NFP4 955 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NUDT10Q8NFP7 164 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 OR8H1Q8NGG4 311 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 OR14K1Q8NGZ2 314 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRSS3P2Q8NHM4 247 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDH19Q8TAB3 1148 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPP1R14CQ8TAE6 165 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADAMTS15Q8TE58 950 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADAMTS18Q8TE60 1221 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NSUN6Q8TEA1 469 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DENND1AQ8TEH3 1009 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CACTINQ8WUQ7 758 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NSMCE1Q8WV22 266 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CHTF18Q8WVB6 975 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRTOMTQ8WZ04 291 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RFFLQ8WZ73 363 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 JADE3Q92613 823 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CENPIQ92674 756 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERCC4Q92889 916 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PHKBQ93100 1093 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF622Q969S3 477 aaKnown RBP eCLIP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 COA7Q96BR5 231 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms