RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 A0A1W2PQ27 194 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 A0A1W2PQ64 194 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 A0A1W2PQD8 194 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 TULP1O00294 542 aaPredicted RBP16.9■□□□□ 0.3
HDAC4-213ENST00000496347 MOSPD3O75425 235 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 SYKP43405 635 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 CYP2J2P51589 502 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 STARD6P59095 220 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 MYL7Q01449 175 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 PRKCQQ04759 706 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 CYP24A1Q07973 514 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 PSMD6Q15008 389 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 MLF2Q15773 248 aaPredicted RBP16.9■□□□□ 0.3
HDAC4-213ENST00000496347 MGAT5BQ3V5L5 792 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 ADGRF2Q8IZF7 708 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 OR5B17Q8NGF7 314 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 DEPDC1BQ8WUY9 529 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 FNBP1Q96RU3 617 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 CGRRF1Q99675 332 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 ACBD6Q9BR61 282 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 SLITRK6Q9H5Y7 841 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 ABCB6Q9NP58 842 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 SLC39A2Q9NP94 309 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 ABI2Q9NYB9 513 aaPredicted RBP16.9■□□□□ 0.3
HDAC4-213ENST00000496347 SLC27A5Q9Y2P5 690 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 SNX9Q9Y5X1 595 aa16.9■□□□□ 0.3
HDAC4-213ENST00000496347 KIF26AQ9ULI4 1882 aaPredicted RBP16.9■□□□□ 0.3
HDAC4-213ENST00000496347 PATJQ8NI35 1801 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 KLRC4O43908 158 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 ATF6P18850 670 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 PCSK1P29120 753 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 LHX1P48742 406 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 PSMD2Q13200 908 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 TEAD2Q15562 447 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 INTS6LQ5JSJ4 861 aaKnown RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 LMBRD2Q68DH5 695 aaPredicted RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 KIAA0895Q8NCT3 520 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 PJA1Q8NG27 643 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 ZSCAN18Q8TBC5 510 aaPredicted RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 TMEM174Q8WUU8 243 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 E2F7Q96AV8 911 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 HPDLQ96IR7 371 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 FAM84AQ96KN4 292 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 GCNAQ96QF7 691 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 DDX23Q9BUQ8 820 aaKnown RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 DDX43Q9NXZ2 648 aaKnown RBP16.89■□□□□ 0.29
HDAC4-213ENST00000496347 PCDHB5Q9Y5E4 795 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 WDR87Q6ZQQ6 2873 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 DMDP11532 3685 aa16.89■□□□□ 0.29
HDAC4-213ENST00000496347 FAM186AA6NE01 2351 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 A0A1W2PRU2 124 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 STK25O00506 426 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 NRG2O14511 850 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-213ENST00000496347 SOAT2O75908 522 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 DLATP10515 647 aaKnown RBP16.88■□□□□ 0.29
HDAC4-213ENST00000496347 HAPLN1P10915 354 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-213ENST00000496347 CDC25CP30307 473 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 MRE11P49959 708 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 TANGO2Q6ICL3 276 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 POTEHQ6S545 545 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 DPH6Q7L8W6 267 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 LIMS2Q7Z4I7 341 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 DNAJB7Q7Z6W7 309 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-213ENST00000496347 LRRTM3Q86VH5 581 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 DTWD2Q8NBA8 298 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 FAM200AQ8TCP9 573 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 LPIN3Q9BQK8 851 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 ZMYM5Q9UJ78 669 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 CFAP54Q96N23 3096 aa16.88■□□□□ 0.29
HDAC4-213ENST00000496347 GABRDO14764 452 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 CLIC2O15247 247 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 PI15O43692 258 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 EXOC3O60645 756 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 GJA1P17302 382 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 PSMC3P17980 439 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 TNNI1P19237 187 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 NDUFA8P51970 172 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 STK4Q13043 487 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 KMT5BQ4FZB7 885 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 ARHGAP15Q53QZ3 475 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 GAREM2Q75VX8 874 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 TRAPPC11Q7Z392 1133 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 SLC9A9Q8IVB4 645 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 ATOH1Q92858 354 aaPredicted RBP16.87■□□□□ 0.29
HDAC4-213ENST00000496347 CCDC47Q96A33 483 aaKnown RBP16.87■□□□□ 0.29
HDAC4-213ENST00000496347 FUBP3Q96I24 572 aaKnown RBP eCLIP16.87■□□□□ 0.29
HDAC4-213ENST00000496347 CHAMP1Q96JM3 812 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 ZSWIM3Q96MP5 696 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 PKMYT1Q99640 499 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 TRMT61BQ9BVS5 477 aaKnown RBP16.87■□□□□ 0.29
HDAC4-213ENST00000496347 ZNF334Q9HCZ1 680 aaPredicted RBP16.87■□□□□ 0.29
HDAC4-213ENST00000496347 TRPV5Q9NQA5 729 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 SIT1Q9Y3P8 196 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 COL4A3Q01955 1670 aa16.87■□□□□ 0.29
HDAC4-213ENST00000496347 CACNA1IQ9P0X4 2223 aa16.86■□□□□ 0.29
HDAC4-213ENST00000496347 ZNF638Q14966 1978 aaKnown RBP16.86■□□□□ 0.29
HDAC4-213ENST00000496347 GVINP1Q7Z2Y8 2422 aa16.86■□□□□ 0.29
HDAC4-213ENST00000496347 KANSL1LA0AUZ9 987 aa16.86■□□□□ 0.29
HDAC4-213ENST00000496347 H0Y858 1186 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms