RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ZMYM2Q9UBW7 1377 aa13.16□□□□□ -0.3
UPF3A-210ENST00000493727 PDXKO00764 312 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 NRP1O14786 923 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 TSPAN1O60635 241 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 DDHD2O94830 711 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 FGFR1OPO95684 399 aaKnown RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 EPCAMP16422 314 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 KLRC2P26717 231 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 SEC13P55735 322 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 CENPPQ6IPU0 288 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 FRMD5Q7Z6J6 570 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 NOC3LQ8WTT2 800 aaKnown RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 BCL7CQ8WUZ0 217 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 NKD2Q969F2 451 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 ACSF2Q96CM8 615 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 HERC2P3Q9BVR0 1158 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 TARS2Q9BW92 718 aaKnown RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 CCDC113Q9H0I3 377 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 KCTD10Q9H3F6 313 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 ANKFY1Q9P2R3 1169 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 GIT1Q9Y2X7 761 aa13.15□□□□□ -0.3
UPF3A-210ENST00000493727 TPRP12270 2363 aaKnown RBP13.15□□□□□ -0.3
UPF3A-210ENST00000493727 CACNA1BQ00975 2339 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 GPR179Q6PRD1 2367 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 H3BM21 787 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ACKR2O00590 384 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CLIC2O15247 247 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 POMCP01189 267 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 NR3C1P04150 777 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 SOD2P04179 222 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 HARSP12081 509 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 NR2F2P24468 414 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 RPL13P26373 211 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 HOXD13P35453 343 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CYP2J2P51589 502 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CLCN4P51793 760 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 PMS1P54277 932 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 SNRPFP62306 86 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 FAM187BQ17R55 369 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ANKRD40Q6AI12 368 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 TTI2Q6NXR4 508 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ARMCX5Q6P1M9 558 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CYP26C1Q6V0L0 522 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ZPBP2Q6X784 338 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 C15orf39Q6ZRI6 1047 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CCDC149Q6ZUS6 474 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ERMP1Q7Z2K6 904 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 LUZP1Q86V48 1076 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 COLGALT2Q8IYK4 626 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 GPR65Q8IYL9 337 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CSGALNACT2Q8N6G5 542 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 C12orf76Q8N812 135 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 SMG8Q8ND04 991 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ENOX1Q8TC92 643 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 POMGNT1Q8WZA1 660 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 KLHL5Q96PQ7 755 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 TCHPQ9BT92 498 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 VN1R3Q9BXE9 311 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 FZD8Q9H461 694 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 AGPAT3Q9NRZ7 376 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 CGNQ9P2M7 1197 aaKnown RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 MAGEC2Q9UBF1 373 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-210ENST00000493727 USP20Q9Y2K6 914 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 NFE2L3Q9Y4A8 694 aa13.14□□□□□ -0.31
UPF3A-210ENST00000493727 ARL5CA6NH57 179 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 IKBKBO14920 756 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 CETN3O15182 167 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 B4GALT5O43286 388 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 TGFB1I1O43294 461 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 B4GALT3O60512 393 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 C1RP00736 705 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 CNPP09543 421 aaKnown RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 NPR3P17342 541 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 ARF4P18085 180 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 AOC1P19801 751 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 MLH1P40692 756 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 OR1G1P47890 313 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 FKBP3Q00688 224 aaKnown RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 DSC1Q08554 894 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 HSP90AA2PQ14568 343 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 EDRF1Q3B7T1 1238 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 ZNF568Q3ZCX4 644 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 ZCWPW2Q504Y3 356 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 ATF7IP2Q5U623 682 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 SPATA1Q5VX52 437 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 SLFN12LQ6IEE8 588 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 OTOP3Q7RTS5 596 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 APBB1IPQ7Z5R6 666 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 GPR149Q86SP6 731 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 GAS2L3Q86XJ1 694 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 DHX40Q8IX18 779 aaKnown RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 TSEN2Q8NCE0 465 aaKnown RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 CMASQ8NFW8 434 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 CPB2Q96IY4 423 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 GAD1Q99259 594 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 COLEC11Q9BWP8 271 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 EIF2AQ9BY44 585 aaKnown RBP13.13□□□□□ -0.31
UPF3A-210ENST00000493727 RHOBTB2Q9BYZ6 727 aa13.13□□□□□ -0.31
UPF3A-210ENST00000493727 IKZF4Q9H2S9 585 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms