RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HEYLQ9NQ87 328 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 TBC1D23Q9NUY8 699 aa6.06□□□□□ -1.44
UPF3B-203ENST00000478840 CNOT6Q9ULM6 557 aaKnown RBP6.06□□□□□ -1.44
UPF3B-203ENST00000478840 A0A1B0GTL3 188 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 CDHR4A6H8M9 788 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 M0QYG6 137 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 RFXAPO00287 272 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 TRIM38O00635 465 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 RASSF9O75901 435 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 CKBP12277 381 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 POLE2P56282 527 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 TRIM71Q2Q1W2 868 aaKnown RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 FAM214AQ32MH5 1076 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 FCRL6Q6DN72 434 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 MFSD5Q6N075 450 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 ZDHHC24Q6UX98 284 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 SUGP1Q8IWZ8 645 aaKnown RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 LINC01356Q8N9X3 169 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 TP53I13Q8NBR0 393 aaPredicted RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 SPPL3Q8TCT6 385 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 OTUD7AQ8TE49 926 aaPredicted RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 STYXQ8WUJ0 223 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 ZSCAN31Q96LW9 406 aaPredicted RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 PPP1R9BQ96SB3 815 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 FAM83DQ9H4H8 585 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 SEC61A2Q9H9S3 476 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 CD320Q9NPF0 282 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 MAP3K20Q9NYL2 800 aaKnown RBP6.05□□□□□ -1.44
UPF3B-203ENST00000478840 DKK4Q9UBT3 224 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 CA14Q9ULX7 337 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 OAZ3Q9UMX2 235 aa6.05□□□□□ -1.44
UPF3B-203ENST00000478840 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.04□□□□□ -1.44
UPF3B-203ENST00000478840 B4GALT3O60512 393 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 FAM155BO75949 473 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 GLP2RO95838 553 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 CPT1AP50416 773 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 KIAA2012Q0VF49 1180 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 ARHGEF7Q14155 803 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 INSCQ1MX18 579 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 SLC5A9Q2M3M2 681 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 ZNF385BQ569K4 471 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 FBXO47Q5MNV8 452 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 PLAG1Q6DJT9 500 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 FAM124AQ86V42 546 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 XYLT1Q86Y38 959 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 ZFPM1Q8IX07 1006 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 NME8Q8N427 588 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 SLC17A8Q8NDX2 589 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 FAM46DQ8NEK8 389 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 PPHLN1Q8NEY8 458 aaKnown RBP6.04□□□□□ -1.44
UPF3B-203ENST00000478840 NUP133Q8WUM0 1156 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 NEIL1Q96FI4 390 aaPredicted RBP6.04□□□□□ -1.44
UPF3B-203ENST00000478840 ETAA1Q9NY74 926 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 SWAP70Q9UH65 585 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 HDAC9Q9UKV0 1011 aa6.04□□□□□ -1.44
UPF3B-203ENST00000478840 KRTAP9-6A0A140TA67 174 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 PRR5-ARHGAP8B1AHC4 643 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 EIF3FO00303 357 aaPredicted RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 PIP5K1BO14986 540 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 B4GALT4O60513 344 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 KIF20AO95235 890 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 CR2P20023 1033 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 BDNFP23560 247 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 SLC6A2P23975 617 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 MGAT1P26572 445 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 MAN1A1P33908 653 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 TOB1P50616 345 aaPredicted RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 SLFN5Q08AF3 891 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 LMOD3Q0VAK6 560 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 DDX10Q13206 875 aaKnown RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 CNGB1Q14028 1251 aaPredicted RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 TAF5Q15542 800 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 ATG14Q6ZNE5 492 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 USP49Q70CQ1 688 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 MOGAT3Q86VF5 341 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 GATAD2AQ86YP4 633 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 COLGALT2Q8IYK4 626 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 PDPRQ8NCN5 879 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 OR52N2Q8NGI0 321 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 TBC1D15Q8TC07 691 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 RSC1A1Q92681 617 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 FAM84AQ96KN4 292 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 FMNL2Q96PY5 1086 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 IMPG2Q9BZV3 1241 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 EPC1Q9H2F5 836 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 SRP68Q9UHB9 627 aaKnown RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 FBXO9Q9UK97 447 aaPredicted RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 SCAF8Q9UPN6 1271 aaKnown RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 SMG5Q9UPR3 1016 aaKnown RBP6.03□□□□□ -1.44
UPF3B-203ENST00000478840 DTNAQ9Y4J8 743 aa6.03□□□□□ -1.44
UPF3B-203ENST00000478840 OR2W5A6NFC9 320 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 RRN3P2A6NIE6 340 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 AQP7P3A6NL99 342 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 DRGXA6NNA5 263 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 J3KRW8 73 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 EYA2O00167 538 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 RAB27BO00194 218 aa6.02□□□□□ -1.45
UPF3B-203ENST00000478840 EPB41L2O43491 1005 aaKnown RBP6.02□□□□□ -1.45
UPF3B-203ENST00000478840 TNFRSF6BO95407 300 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms