RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GAREM1Q9H706 876 aa8.83□□□□□ -1
USP54-211ENST00000474929 FBRSL1Q9HCM7 1045 aaKnown RBP8.83□□□□□ -1
USP54-211ENST00000474929 TDP1Q9NUW8 608 aa8.83□□□□□ -1
USP54-211ENST00000474929 PRMT7Q9NVM4 692 aaPredicted RBP8.83□□□□□ -1
USP54-211ENST00000474929 BARHL2Q9NY43 387 aa8.83□□□□□ -1
USP54-211ENST00000474929 NUB1Q9Y5A7 615 aa8.83□□□□□ -1
USP54-211ENST00000474929 CEP192Q8TEP8 1941 aa8.83□□□□□ -1
USP54-211ENST00000474929 FLNCQ14315 2725 aa8.82□□□□□ -1
USP54-211ENST00000474929 TCRBV21S2A2A0A5A6 115 aa8.82□□□□□ -1
USP54-211ENST00000474929 TBX3O15119 743 aa8.82□□□□□ -1
USP54-211ENST00000474929 NDUFS2O75306 463 aa8.82□□□□□ -1
USP54-211ENST00000474929 CILPO75339 1184 aa8.82□□□□□ -1
USP54-211ENST00000474929 STBD1O95210 358 aa8.82□□□□□ -1
USP54-211ENST00000474929 NFATC1O95644 943 aa8.82□□□□□ -1
USP54-211ENST00000474929 SFTPCP11686 197 aa8.82□□□□□ -1
USP54-211ENST00000474929 SDSP20132 328 aa8.82□□□□□ -1
USP54-211ENST00000474929 PTH1RQ03431 593 aa8.82□□□□□ -1
USP54-211ENST00000474929 VAC14Q08AM6 782 aa8.82□□□□□ -1
USP54-211ENST00000474929 DCAF4L1Q3SXM0 396 aa8.82□□□□□ -1
USP54-211ENST00000474929 ARHGAP40Q5TG30 622 aa8.82□□□□□ -1
USP54-211ENST00000474929 PLA2G4FQ68DD2 849 aa8.82□□□□□ -1
USP54-211ENST00000474929 TRIM68Q6AZZ1 485 aa8.82□□□□□ -1
USP54-211ENST00000474929 DHRS13Q6UX07 377 aa8.82□□□□□ -1
USP54-211ENST00000474929 OTUD6AQ7L8S5 288 aa8.82□□□□□ -1
USP54-211ENST00000474929 REXO1Q8N1G1 1221 aaKnown RBP8.82□□□□□ -1
USP54-211ENST00000474929 TRIML1Q8N9V2 468 aa8.82□□□□□ -1
USP54-211ENST00000474929 OTUD7AQ8TE49 926 aaPredicted RBP8.82□□□□□ -1
USP54-211ENST00000474929 OSCP1Q8WVF1 389 aa8.82□□□□□ -1
USP54-211ENST00000474929 SLC5A5Q92911 643 aa8.82□□□□□ -1
USP54-211ENST00000474929 SH2D3AQ9BRG2 576 aa8.82□□□□□ -1
USP54-211ENST00000474929 C6orf50Q9HD87 102 aa8.82□□□□□ -1
USP54-211ENST00000474929 TOPORSQ9NS56 1045 aaPredicted RBP8.82□□□□□ -1
USP54-211ENST00000474929 RBM28Q9NW13 759 aaKnown RBP8.82□□□□□ -1
USP54-211ENST00000474929 FTSJ1Q9UET6 329 aa8.82□□□□□ -1
USP54-211ENST00000474929 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.82□□□□□ -1
USP54-211ENST00000474929 ANK1P16157 1881 aa8.82□□□□□ -1
USP54-211ENST00000474929 ITPR3Q14573 2671 aa8.82□□□□□ -1
USP54-211ENST00000474929 FBN2P35556 2912 aa8.81□□□□□ -1
USP54-211ENST00000474929 ESYT2A0FGR8 921 aa8.81□□□□□ -1
USP54-211ENST00000474929 TMEM150BA6NC51 233 aa8.81□□□□□ -1
USP54-211ENST00000474929 OTOL1A6NHN0 477 aaPredicted RBP8.81□□□□□ -1
USP54-211ENST00000474929 MSH4O15457 936 aa8.81□□□□□ -1
USP54-211ENST00000474929 ARSAP15289 507 aa8.81□□□□□ -1
USP54-211ENST00000474929 EIF2DP41214 584 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 BRCC3P46736 316 aa8.81□□□□□ -1
USP54-211ENST00000474929 QARSP47897 775 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 PDE1AP54750 535 aa8.81□□□□□ -1
USP54-211ENST00000474929 SEC13P55735 322 aa8.81□□□□□ -1
USP54-211ENST00000474929 NFATC3Q12968 1075 aa8.81□□□□□ -1
USP54-211ENST00000474929 MTF1Q14872 753 aa8.81□□□□□ -1
USP54-211ENST00000474929 TAF12Q16514 161 aa8.81□□□□□ -1
USP54-211ENST00000474929 TMEM132AQ24JP5 1023 aa8.81□□□□□ -1
USP54-211ENST00000474929 KRTAP21-3Q3LHN1 58 aa8.81□□□□□ -1
USP54-211ENST00000474929 JAKMIP3Q5VZ66 844 aa8.81□□□□□ -1
USP54-211ENST00000474929 CWC27Q6UX04 472 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 TMEM92Q6UXU6 159 aa8.81□□□□□ -1
USP54-211ENST00000474929 RNF19BQ6ZMZ0 732 aa8.81□□□□□ -1
USP54-211ENST00000474929 DNAJB7Q7Z6W7 309 aaPredicted RBP8.81□□□□□ -1
USP54-211ENST00000474929 ERICH1Q86X53 443 aa8.81□□□□□ -1
USP54-211ENST00000474929 CACTIN-AS1Q8N1I8 211 aa8.81□□□□□ -1
USP54-211ENST00000474929 BICD2Q8TD16 824 aa8.81□□□□□ -1
USP54-211ENST00000474929 KCNV2Q8TDN2 545 aa8.81□□□□□ -1
USP54-211ENST00000474929 OXER1Q8TDS5 423 aa8.81□□□□□ -1
USP54-211ENST00000474929 IGDCC4Q8TDY8 1250 aa8.81□□□□□ -1
USP54-211ENST00000474929 EZH1Q92800 747 aaPredicted RBP8.81□□□□□ -1
USP54-211ENST00000474929 RILPL2Q969X0 211 aa8.81□□□□□ -1
USP54-211ENST00000474929 LENG9Q96B70 501 aa8.81□□□□□ -1
USP54-211ENST00000474929 TMEM87BQ96K49 555 aa8.81□□□□□ -1
USP54-211ENST00000474929 PPP1R10Q96QC0 940 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 MTMR9Q96QG7 549 aa8.81□□□□□ -1
USP54-211ENST00000474929 DPH1Q9BZG8 443 aa8.81□□□□□ -1
USP54-211ENST00000474929 DNAJC25Q9H1X3 360 aa8.81□□□□□ -1
USP54-211ENST00000474929 SENP2Q9HC62 589 aa8.81□□□□□ -1
USP54-211ENST00000474929 DUS2Q9NX74 493 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 SPTBN1Q01082 2364 aaKnown RBP8.81□□□□□ -1
USP54-211ENST00000474929 NID2Q14112 1375 aa8.81□□□□□ -1
USP54-211ENST00000474929 CNTNAP5Q8WYK1 1306 aa8.8□□□□□ -1
USP54-211ENST00000474929 IGHV1OR15-9A0A0B4J2B8 117 aa8.8□□□□□ -1
USP54-211ENST00000474929 hCG_1642624A0A1W2PR95 340 aa8.8□□□□□ -1
USP54-211ENST00000474929 OR6C75A6NL08 312 aa8.8□□□□□ -1
USP54-211ENST00000474929 MEI4A8MW99 385 aa8.8□□□□□ -1
USP54-211ENST00000474929 PODXLO00592 558 aa8.8□□□□□ -1
USP54-211ENST00000474929 BRINP1O60477 761 aa8.8□□□□□ -1
USP54-211ENST00000474929 RFPL3O75679 317 aa8.8□□□□□ -1
USP54-211ENST00000474929 PSMD10O75832 226 aa8.8□□□□□ -1
USP54-211ENST00000474929 KLF8O95600 359 aaPredicted RBP8.8□□□□□ -1
USP54-211ENST00000474929 MARCKSP29966 332 aaPredicted RBP8.8□□□□□ -1
USP54-211ENST00000474929 GNA11P29992 359 aa8.8□□□□□ -1
USP54-211ENST00000474929 AFMP43652 599 aa8.8□□□□□ -1
USP54-211ENST00000474929 TUFMP49411 452 aaKnown RBP8.8□□□□□ -1
USP54-211ENST00000474929 CYP4F8P98187 520 aa8.8□□□□□ -1
USP54-211ENST00000474929 YWHAHQ04917 246 aaPredicted RBP8.8□□□□□ -1
USP54-211ENST00000474929 USP4Q13107 963 aa8.8□□□□□ -1
USP54-211ENST00000474929 MARCH9Q86YJ5 346 aa8.8□□□□□ -1
USP54-211ENST00000474929 SLC41A1Q8IVJ1 513 aa8.8□□□□□ -1
USP54-211ENST00000474929 ZBTB8OSQ8IWT0 167 aa8.8□□□□□ -1
USP54-211ENST00000474929 LSMEM2Q8N112 164 aa8.8□□□□□ -1
USP54-211ENST00000474929 CCDC33Q8N5R6 958 aa8.8□□□□□ -1
USP54-211ENST00000474929 TXNDC5Q8NBS9 432 aaKnown RBP8.8□□□□□ -1
USP54-211ENST00000474929 EXOC6Q8TAG9 804 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms