RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 GJB1P08034 283 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 UBTFL6P0CB48 400 aaPredicted RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 CUL2Q13617 745 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 NCOA4Q13772 614 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 STRA6Q9BX79 667 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 QTRT2Q9H974 415 aaKnown RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 MRPL47Q9HD33 250 aaKnown RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 ARL8BQ9NVJ2 186 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 TJP3O95049 919 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 TOP3BO95985 862 aaKnown RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 OAS1P00973 400 aaKnown RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 F7P08709 466 aaPredicted RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 RASSF2P50749 326 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 MMRN1Q13201 1228 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 ZCCHC23Q6ZST2 131 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 MAIP1Q8WWC4 291 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 PAFAH2Q99487 392 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SENP7Q9BQF6 1050 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 PIDD1Q9HB75 910 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 RNF146Q9NTX7 359 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDH3-202ENST00000429102 KCND2Q9NZV8 630 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 MAD1L1Q9Y6D9 718 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 FAM237BA0A1B0GVD1 139 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SPDYE2BA6NHP3 402 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 LIASO43766 372 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 NR3C2P08235 984 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SPDYE6P0CI01 402 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 TROVE2P10155 538 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDH3-202ENST00000429102 RFC5P40937 340 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 MYL6P60660 151 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SPDYCQ5MJ68 293 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 MORC4Q8TE76 937 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 FAM161BQ96MY7 647 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 PDCD2LQ9BRP1 358 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 TMEM109Q9BVC6 243 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 GPATCH2LQ9NWQ4 482 aa13.13□□□□□ -0.31
CDH3-202ENST00000429102 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.13□□□□□ -0.31
CDH3-202ENST00000429102 DNALI1O14645 258 aaPredicted RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 P4HA2O15460 535 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 EGFRP00533 1210 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 NR1H3Q13133 447 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 TRPC3Q13507 836 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 EML3Q32P44 896 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RAB6CQ53S08 254 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 WDR78Q5VTH9 848 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 MAP4K3Q8IVH8 894 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 LRRC71Q8N4P6 559 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CCHCR1Q8TD31 782 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RAB6CQ9H0N0 254 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 SMYD3Q9H7B4 428 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 FEM1BQ9UK73 627 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 G3BP2Q9UN86 482 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 UBE4BO95155 1302 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 H7C0C1 242 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CAPN9O14815 690 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 MAP3K13O43283 966 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 LPXNO60711 386 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ICAM1P05362 532 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 PYGBP11216 843 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ESRRAP11474 423 aaPredicted RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 GLRA2P23416 452 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 GCAP28676 217 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RFC1P35251 1148 aaPredicted RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 ATP5OP48047 213 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 PSEN1P49768 467 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ARFIP2P53365 341 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 NOMO3P69849 1222 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 SNRNP48Q6IEG0 339 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 SPOCD1Q6ZMY3 1216 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ALYREFQ86V81 257 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 ABRAQ8N0Z2 381 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 KCTD6Q8NC69 237 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CFAP61Q8NHU2 1237 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CLEC4DQ8WXI8 215 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 STMN2Q93045 179 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CCDC134Q9H6E4 229 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RPAP3Q9H6T3 665 aaPredicted RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 PPARGC1AQ9UBK2 798 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 PACSIN3Q9UKS6 424 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CYB561D2O14569 222 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 T-ENOLP0DO92 83 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 HADHBP55084 474 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 TRAF1Q13077 416 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 WDR72Q3MJ13 1102 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RNF220Q5VTB9 566 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 CRELD2Q6UXH1 353 aaPredicted RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 UNC45BQ8IWX7 931 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 JOSD2Q8TAC2 188 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 AGR3Q8TD06 166 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ACAP3Q96P50 834 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 RNPEPL1Q9HAU8 725 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 TBC1D22BQ9NU19 505 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 SLC9A2Q9UBY0 812 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 PRKAG3Q9UGI9 489 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 XPO7Q9UIA9 1087 aaKnown RBP13.12□□□□□ -0.31
CDH3-202ENST00000429102 GINS2Q9Y248 185 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ZNF536O15090 1300 aa13.12□□□□□ -0.31
CDH3-202ENST00000429102 ARFGEF1Q9Y6D6 1849 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms