RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM41AQ96HV5 264 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SNX22Q96L94 193 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 TINAGL1Q9GZM7 467 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 SIK2Q9H0K1 926 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 GPR35Q9HC97 309 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 FAM30AQ9NZY2 134 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 MYO1AQ9UBC5 1043 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 SLC45A2Q9UMX9 530 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 MYRFQ9Y2G1 1151 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 USP15Q9Y4E8 981 aaPredicted RBP5.58□□□□□ -1.52
VPS54-204ENST00000416400 PLEKHM1Q9Y4G2 1056 aa5.58□□□□□ -1.52
VPS54-204ENST00000416400 hCG_1642624A0A1W2PR95 340 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 M0QYG6 137 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 MYO1CO00159 1063 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 LEFTY2O00292 366 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 THAP12O43422 761 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 RPS6KA4O75676 772 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 DNAJB5O75953 348 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 AGFG2O95081 481 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 CHEK2O96017 543 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 MT-ND5P03915 603 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 KLRC1P26715 233 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 HSPA7P48741 367 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 HTRA4P83105 476 aaPredicted RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 ICA1Q05084 483 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 TOB2Q14106 344 aaPredicted RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 MPEG1Q2M385 716 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 ZXDCQ2QGD7 858 aaPredicted RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 TMEM95Q3KNT9 176 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 TUBB8Q3ZCM7 444 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 SPDYE7PQ495Y7 208 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 LCE4AQ5TA78 99 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 CCDC174Q6PII3 467 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 BEND5Q7L4P6 421 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 GDF7Q7Z4P5 450 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 TXLNBQ8N3L3 684 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 TBC1D15Q8TC07 691 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 ZNF566Q969W8 418 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 SCLT1Q96NL6 688 aa5.57□□□□□ -1.52
VPS54-204ENST00000416400 ZNF703Q9H7S9 590 aaPredicted RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 A1CFQ9NQ94 594 aaKnown RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 REXO2Q9Y3B8 237 aaKnown RBP5.57□□□□□ -1.52
VPS54-204ENST00000416400 PYCARD-AS1I3L0S3 204 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 RNASET2O00584 256 aaKnown RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 NPHP1O15259 732 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 PIP5K1CO60331 668 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 CKBP12277 381 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 EEF1GP26641 437 aaKnown RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 CHKAP35790 457 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 SLC11A2P49281 568 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 CARSP49589 748 aaKnown RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 PPM1FP49593 454 aaPredicted RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 UCP3P55916 312 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 FOXE3Q13461 319 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 BLMHQ13867 455 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 PUM1Q14671 1186 aaKnown RBP eCLIP5.56□□□□□ -1.52
VPS54-204ENST00000416400 ELF2Q15723 593 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 CRB2Q5IJ48 1285 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 PGBD2Q6P3X8 592 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 DBX2Q6ZNG2 339 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 RHOT2Q8IXI1 618 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 ZNF276Q8N554 614 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 NKAPQ8N5F7 415 aaKnown RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 SLC15A4Q8N697 577 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 DNAJC5GQ8N7S2 189 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 ZNF527Q8NB42 609 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 TMIEQ8NEW7 156 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 SLC25A43Q8WUT9 341 aaPredicted RBP5.56□□□□□ -1.52
VPS54-204ENST00000416400 CCT6BQ92526 530 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 TTLL2Q9BWV7 592 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 STK31Q9BXU1 1019 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 SLC46A2Q9BY10 475 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 RNPEPQ9H4A4 650 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 RNF181Q9P0P0 153 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 ITGB1BP2Q9UKP3 347 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 TMX2Q9Y320 296 aa5.56□□□□□ -1.52
VPS54-204ENST00000416400 A0A087WWL8 130 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 GAGE12BA1L429 117 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 GAGE12HA6NDE8 117 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 FFAR2O15552 330 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 ERN1O75460 977 aaKnown RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 PEX11BO96011 259 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 C1SP09871 688 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 PIM1P11309 404 aaPredicted RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 PAX3P23760 479 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 SLC6A2P23975 617 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 PTGS2P35354 604 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 GRM1Q13255 1194 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 TUBA3CQ13748 450 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 PUM3Q15397 648 aaKnown RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 LSM12Q3MHD2 195 aaKnown RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 CCDC38Q502W7 563 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 DCAF12L1Q5VU92 463 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 TUBA3EQ6PEY2 450 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 UNC13DQ70J99 1090 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 RNF44Q7L0R7 432 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 USP37Q86T82 979 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 SYT12Q8IV01 421 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 CPXCR1Q8N123 301 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 SDR16C5Q8N3Y7 309 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms