RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GOLGA6L7A0A1B0GV03 622 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 OGTO15294 1046 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 MAFO75444 373 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TNNC2P02585 160 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PRKCBP05771 671 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CD58P19256 250 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 PTK6Q13882 451 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DNAJC24Q6P3W2 148 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 APBB1IPQ7Z5R6 666 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DYDC1Q8WWB3 177 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF606Q8WXB4 792 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 CENPTQ96BT3 561 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 DDX27Q96GQ7 796 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 RBM41Q96IZ5 413 aaKnown RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 TMEM109Q9BVC6 243 aa10.2□□□□□ -0.78
COL6A3-204ENST00000392003 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-204ENST00000392003 WDR81Q562E7 1941 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 IGKV6D-21A0A0A0MT36 114 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 SOWAHBA6NEL2 793 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 DCDC2CA8MYV0 355 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 PAEPP09466 180 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 WNT7BP56706 349 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 TFAMQ00059 246 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 MPP3Q13368 585 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 MAMLD1Q13495 774 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 TFDP1Q14186 410 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CCNG2Q16589 344 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 SGSM1Q2NKQ1 1148 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 LLGL2Q6P1M3 1020 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 PNMA8AQ86V59 439 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 RNF149Q8NC42 400 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 EXD1Q8NHP7 514 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 MDM1Q8TC05 714 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 SPATA33Q96N06 139 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 HAPLN2Q9GZV7 340 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 PARP14Q460N5 1801 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 ACSL3O95573 720 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CYP2C8P10632 490 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CHN1P15882 459 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 PLEKHA7Q6IQ23 1121 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CEP57Q86XR8 500 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 KATNAL2Q8IYT4 538 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CHMP6Q96FZ7 201 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 TRAIPQ9BWF2 469 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 NIF3L1Q9GZT8 377 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 EPB41L4BQ9H329 900 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CDC42EP4Q9H3Q1 356 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 CNTNAP2Q9UHC6 1331 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 UPP2O95045 317 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 TXNP10599 105 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 ITGA8P53708 1063 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 IGBP1P78318 339 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 MKRN4PQ13434 485 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 TARBP2Q15633 366 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 RBM12BQ8IXT5 1001 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 RCOR2Q8IZ40 523 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 EPS8L3Q8TE67 593 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 ANKRD36BP1Q96IX9 119 aa10.19□□□□□ -0.78
COL6A3-204ENST00000392003 NSRP1Q9H0G5 558 aaKnown RBP10.19□□□□□ -0.78
COL6A3-204ENST00000392003 UTRNP46939 3433 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 UMODL1Q5DID0 1318 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 GLTPD2A6NH11 291 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF189O75820 626 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 RTN3O95197 1032 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 LSM8O95777 96 aaKnown RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ASS1P00966 412 aaKnown RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 KRT1P04264 644 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 TAP1Q03518 808 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 GRM1Q13255 1194 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 E2F5Q15329 346 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 YTHDF3Q7Z739 585 aaKnown RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 TAX1BP1Q86VP1 789 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 FBXO16Q8IX29 292 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ANKS4BQ8N8V4 417 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 PCYT2Q99447 389 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 MTMR12Q9C0I1 747 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 CAPN7Q9Y6W3 813 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 TJP3O95049 919 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 CD19P15391 556 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ATF7P17544 494 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 TAS2R40P59535 323 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 MYL6P60660 151 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 IFI35P80217 286 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 LAMTOR4Q0VGL1 99 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF699Q32M78 642 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 Q3C1V9 767 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF394Q53GI3 561 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 KAZNQ674X7 775 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 DPP9Q86TI2 863 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ERICH1Q86X53 443 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 THNSL1Q8IYQ7 743 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 CCHCR1Q8TD31 782 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF518BQ9C0D4 1074 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 YIPF3Q9GZM5 350 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 MROH8Q9H579 483 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 DDX20Q9UHI6 824 aaKnown RBP10.18□□□□□ -0.78
COL6A3-204ENST00000392003 CNTN6Q9UQ52 1028 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 RLFQ13129 1914 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 ADGRA2Q96PE1 1338 aa10.18□□□□□ -0.78
COL6A3-204ENST00000392003 INO80B-WBP1J3KQ70 363 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms