RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 CETN3O15182 167 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 N4BP1O75113 896 aaKnown RBP16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 COL9A1P20849 921 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 VAMP7P51809 220 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 RPL10AP62906 217 aaKnown RBP16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 EDRF1Q3B7T1 1238 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 C4orf50Q6ZRC1 276 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 SPATA2LQ8IUW3 424 aaPredicted RBP16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 FAM186BQ8IYM0 893 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 CCDC150Q8NCX0 1101 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 CXorf38Q8TB03 319 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 ITFG1Q8TB96 612 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 ING5Q8WYH8 240 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 TMEM209Q96SK2 561 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 DNAI2Q9GZS0 605 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 SLITRK6Q9H5Y7 841 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 CDH9Q9ULB4 789 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 DUSP12Q9UNI6 340 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 PCDHA5Q9Y5H7 936 aa16.9■□□□□ 0.3
TSPAN4-201ENST00000346501 MYO10Q9HD67 2058 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 LRRIQ3A6PVS8 624 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 PSMA7O14818 248 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 STX10O60499 249 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 STAU1O95793 577 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 CST3P01034 146 aaPredicted RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 EPB41P11171 864 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 UBE2HP62256 183 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 NCOA4Q13772 614 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 SOWAHAQ2M3V2 549 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 ZNF699Q32M78 642 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 ARHGAP15Q53QZ3 475 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 ZNF667Q5HYK9 610 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 INTS6LQ5JSJ4 861 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 NPAS3Q8IXF0 933 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 SLC44A3Q8N4M1 653 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 OR6B3Q8NGW1 331 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 MCRS1Q96EZ8 462 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 FAM84AQ96KN4 292 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 ABCB6Q9NP58 842 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 C11orf16Q9NQ32 467 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 CEP72Q9P209 647 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 NXF1Q9UBU9 619 aaKnown RBP16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 NUMBLQ9Y6R0 609 aa16.89■□□□□ 0.29
TSPAN4-201ENST00000346501 ANHXE9PGG2 379 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 SRFP11831 508 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 ACAT1P24752 427 aaKnown RBP16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 GNL1P36915 607 aaPredicted RBP16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 CASP4P49662 377 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 MYL6P60660 151 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 ENPEPQ07075 957 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 HTR4Q13639 388 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 SGSM1Q2NKQ1 1148 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 COBLL1Q53SF7 1204 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 HFE2Q6ZVN8 426 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 DNAJB7Q7Z6W7 309 aaPredicted RBP16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 FBXL6Q8N531 539 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 TAF4BQ92750 862 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 PSMG2Q969U7 264 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 FUBP3Q96I24 572 aaKnown RBP eCLIP16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 RTP3Q9BQQ7 232 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 SYT15Q9BQS2 421 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 MKNK1Q9BUB5 465 aa16.88■□□□□ 0.29
TSPAN4-201ENST00000346501 STK25O00506 426 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 GABRDO14764 452 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 TACC1O75410 805 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 CSH1P0DML2 217 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 CSH2P0DML3 217 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 HAPLN1P10915 354 aaPredicted RBP16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 WARSP23381 471 aaKnown RBP16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 CDC25CP30307 473 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 PIK3CAP42336 1068 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 PRCPP42785 496 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 EPHA5P54756 1037 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 CLDN10P78369 228 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 FKBP3Q00688 224 aaKnown RBP16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 LRRC63Q05C16 580 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 SMYD4Q8IYR2 804 aaPredicted RBP16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 HS6ST3Q8IZP7 471 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 SPATA20Q8TB22 786 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 RSAD2Q8WXG1 361 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 ZNF516Q92618 1163 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 PI4K2AQ9BTU6 479 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 ZFP14Q9HCL3 533 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 MAGEC2Q9UBF1 373 aaPredicted RBP16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 ZMYM5Q9UJ78 669 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 GTF3C4Q9UKN8 822 aa16.87■□□□□ 0.29
TSPAN4-201ENST00000346501 A8MXQ7 604 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 AKAP3O75969 853 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 C4BPAP04003 597 aaKnown RBP16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 PDGFRBP09619 1106 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 CEBPBP17676 345 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 PFKPQ01813 784 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 SLC5A9Q2M3M2 681 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 ZACNQ401N2 412 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 PRSS36Q5K4E3 855 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 TDRD10Q5VZ19 366 aaKnown RBP16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 PARM1Q6UWI2 310 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 LRRTM3Q86VH5 581 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 E2F7Q96AV8 911 aa16.86■□□□□ 0.29
TSPAN4-201ENST00000346501 DHTKD1Q96HY7 919 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms