RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PLIN5Q00G26 463 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 PDK1Q15118 436 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 UGP2Q16851 508 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 DNAAF5Q86Y56 855 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 FAM136AQ96C01 138 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 SH3BP1Q9Y3L3 701 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 TULP4Q9NRJ4 1543 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 EIF3HO15372 352 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP53-201ENST00000274030 CD44P16070 742 aaKnown RBP11.97□□□□□ -0.49
USP53-201ENST00000274030 TAL1P17542 331 aaPredicted RBP11.97□□□□□ -0.49
USP53-201ENST00000274030 ACO1P21399 889 aaKnown RBP11.97□□□□□ -0.49
USP53-201ENST00000274030 SPRP35270 261 aaPredicted RBP11.97□□□□□ -0.49
USP53-201ENST00000274030 CDC42EP1Q00587 391 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 PATL1Q86TB9 770 aaKnown RBP11.97□□□□□ -0.49
USP53-201ENST00000274030 CLEC4FQ8N1N0 589 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 SNX31Q8N9S9 440 aa11.97□□□□□ -0.49
USP53-201ENST00000274030 CYP11B2P19099 503 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 PTGER2P43116 358 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 GRB10Q13322 594 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 ARMC2Q8NEN0 867 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 SEC16BQ96JE7 1060 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 MTMR12Q9C0I1 747 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 PNMA8BQ9ULN7 279 aaPredicted RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 SPATA31A1Q5TZJ5 1347 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 TARBP1Q13395 1621 aaKnown RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 B2RBV5 119 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 C5orf58C9J3I9 102 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 CSDE1O75534 798 aaKnown RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 SNRPAP09012 282 aaKnown RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 ARP10275 920 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 OVGP1Q12889 678 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 VPS72Q15906 364 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 C11orf96Q7Z7L8 435 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 FOPNLQ96NB1 174 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 ZFYVE28Q9HCC9 887 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 DDIT4Q9NX09 232 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 BCORL1Q5H9F3 1711 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 M0QYT0 321 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 CELF2O95319 508 aaKnown RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 FAM200BP0CF97 657 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 LSP1P33241 339 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 COILP38432 576 aaPredicted RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 SPIRE2Q8WWL2 714 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 TSPAN17Q96FV3 270 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 ZFYVE19Q96K21 471 aa11.96□□□□□ -0.49
USP53-201ENST00000274030 CDV3Q9UKY7 258 aaKnown RBP11.96□□□□□ -0.49
USP53-201ENST00000274030 PRR23AA6NEV1 266 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 TRIM66O15016 1216 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 ENDOD1O94919 500 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 AVPR1AP37288 418 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 CHI3L2Q15782 390 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 NOTUMQ6P988 496 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 NUDT18Q6ZVK8 323 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 C11orf74Q86VG3 221 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 MIB1Q86YT6 1006 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 RAB42Q8N4Z0 105 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 CYGBQ8WWM9 190 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 EME1Q96AY2 570 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 CBWD1Q9BRT8 395 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 SLC38A7Q9NVC3 462 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 CAND2O75155 1236 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 PTPN7P35236 360 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 DNAJC3Q13217 504 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 INPP5AQ14642 412 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 ACOT1Q86TX2 421 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 ZNF513Q8N8E2 541 aaPredicted RBP11.96□□□□□ -0.5
USP53-201ENST00000274030 ABHD8Q96I13 439 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 TMEM106CQ9BVX2 250 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 TRPM1Q7Z4N2 1603 aa11.96□□□□□ -0.5
USP53-201ENST00000274030 B3GAT3O94766 335 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 SLC25A27O95847 323 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 SERPINB9P50453 376 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ABCE1P61221 599 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 PACSIN1Q9BY11 444 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 DPP3Q9NY33 737 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 THPOP40225 353 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 CUL2Q13617 745 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 SLC30A10Q6XR72 485 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 KCNB2Q92953 911 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 BRD8Q9H0E9 1235 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 CATSPERBQ9H7T0 1116 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 GPATCH2LQ9NWQ4 482 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ACADSBP45954 432 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 PMS1P54277 932 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 EFHC1Q5JVL4 640 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 DCP1BQ8IZD4 617 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 KAT2BQ92831 832 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 SGSM3Q96HU1 749 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 MKNK1Q9BUB5 465 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ANKEF1Q9NU02 776 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 LZTS1Q9Y250 596 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 TRIM49D1C9J1S8 452 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ADCY3O60266 1144 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 VTNP04004 478 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 PON1P27169 355 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 HARS2P49590 506 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 CTCFP49711 727 aaPredicted RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 LRIG3Q6UXM1 1119 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ANKS3Q6ZW76 656 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 STKLD1Q8NE28 680 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms