RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 C12orf56Q8IXR9 622 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 SPPL2BQ8TCT7 592 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 SMARCD2Q92925 531 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 PSMG2Q969U7 264 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 ACBD6Q9BR61 282 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 R3HCC1Q9Y3T6 440 aaKnown RBP17.29■□□□□ 0.36
USE1-201ENST00000263897 SNX9Q9Y5X1 595 aa17.29■□□□□ 0.36
USE1-201ENST00000263897 MYL1P05976 194 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 HAPLN1P10915 354 aaPredicted RBP17.28■□□□□ 0.36
USE1-201ENST00000263897 MRE11P49959 708 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 STK4Q13043 487 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 PSMD6Q15008 389 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 SOWAHAQ2M3V2 549 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 MGAT5BQ3V5L5 792 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 KMT5BQ4FZB7 885 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 DPH6Q7L8W6 267 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 CCDC105Q8IYK2 499 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 TOP6BLQ8N6T0 577 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 DTWD2Q8NBA8 298 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 SPATA18Q8TC71 538 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 ATOH1Q92858 354 aaPredicted RBP17.28■□□□□ 0.36
USE1-201ENST00000263897 HPDLQ96IR7 371 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 PHOX2BQ99453 314 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 SEPT5Q99719 369 aaPredicted RBP17.28■□□□□ 0.36
USE1-201ENST00000263897 TRPV4Q9HBA0 871 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 TMLHEQ9NVH6 421 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 DDX43Q9NXZ2 648 aaKnown RBP17.28■□□□□ 0.36
USE1-201ENST00000263897 SIT1Q9Y3P8 196 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 PCDHB5Q9Y5E4 795 aa17.28■□□□□ 0.36
USE1-201ENST00000263897 F5P12259 2224 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 A0A1W2PRU2 124 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 GABRDO14764 452 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 FGF19O95750 216 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 TNNI1P19237 187 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 SYKP43405 635 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 LHX1P48742 406 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 NDUFA8P51970 172 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 MYL7Q01449 175 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 TSPY1Q01534 308 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 PRKCQQ04759 706 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 CYP24A1Q07973 514 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 NFE2Q16621 373 aaPredicted RBP17.27■□□□□ 0.36
USE1-201ENST00000263897 GAREM2Q75VX8 874 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 TRAPPC11Q7Z392 1133 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 LIMS2Q7Z4I7 341 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 ZSCAN18Q8TBC5 510 aaPredicted RBP17.27■□□□□ 0.36
USE1-201ENST00000263897 FAM200AQ8TCP9 573 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 CCDC127Q96BQ5 260 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 FNBP1Q96RU3 617 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 DDX23Q9BUQ8 820 aaKnown RBP17.27■□□□□ 0.36
USE1-201ENST00000263897 ZNF334Q9HCZ1 680 aaPredicted RBP17.27■□□□□ 0.36
USE1-201ENST00000263897 EXOC1Q9NV70 894 aa17.27■□□□□ 0.36
USE1-201ENST00000263897 ABI2Q9NYB9 513 aaPredicted RBP17.27■□□□□ 0.36
USE1-201ENST00000263897 ZFHX2Q9C0A1 2572 aaPredicted RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 A0A1W2PQ27 194 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 A0A1W2PQ64 194 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 A0A1W2PQD8 194 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 EXOC3O60645 756 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 PRPF40AO75400 957 aaKnown RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 CST3P01034 146 aaPredicted RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 DLATP10515 647 aaKnown RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 PSMC3P17980 439 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 ATF6P18850 670 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 VIPR2P41587 438 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 BECN1Q14457 450 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 VEPH1Q14D04 833 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 MLF2Q15773 248 aaPredicted RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 OSTM1Q86WC4 334 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 KIAA0895Q8NCT3 520 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 GOLGA5Q8TBA6 731 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 CGRRF1Q99675 332 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 LPIN3Q9BQK8 851 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 TRMT61BQ9BVS5 477 aaKnown RBP17.26■□□□□ 0.35
USE1-201ENST00000263897 ATXN3LQ9H3M9 355 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 SLITRK6Q9H5Y7 841 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 FAM86C1Q9NVL1 165 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 GTF3C4Q9UKN8 822 aa17.26■□□□□ 0.35
USE1-201ENST00000263897 KANSL1LA0AUZ9 987 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 ACAT1P24752 427 aaKnown RBP17.25■□□□□ 0.35
USE1-201ENST00000263897 GABRR2P28476 465 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 GRM2Q14416 872 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 TAF12Q16514 161 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 INTS6LQ5JSJ4 861 aaKnown RBP17.25■□□□□ 0.35
USE1-201ENST00000263897 VITQ6UXI7 678 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 MFSD6LQ8IWD5 586 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 ADGRF2Q8IZF7 708 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 GIPC2Q8TF65 315 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 TMEM174Q8WUU8 243 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 ZNF516Q92618 1163 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 E2F7Q96AV8 911 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 PKMYT1Q99640 499 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 PI4K2AQ9BTU6 479 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 FOXQ1Q9C009 403 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 GZF1Q9H116 711 aaPredicted RBP17.25■□□□□ 0.35
USE1-201ENST00000263897 BRD9Q9H8M2 597 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 DMAC2Q9NW81 257 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 DLGAP2Q9P1A6 1054 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 CACNA1IQ9P0X4 2223 aa17.25■□□□□ 0.35
USE1-201ENST00000263897 RPN1P04843 607 aaKnown RBP17.24■□□□□ 0.35
USE1-201ENST00000263897 DCNP07585 359 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms