RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 XYLBO75191 536 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 TACC1O75410 805 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 GNA14O95837 355 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 RPL17P18621 184 aaKnown RBP19.64■□□□□ 0.73
CLN3-259ENST00000637551 BMP6P22004 513 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 CASP4P49662 377 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 RBM10P98175 930 aaKnown RBP19.64■□□□□ 0.73
CLN3-259ENST00000637551 RBM43Q6ZSC3 357 aaKnown RBP19.64■□□□□ 0.73
CLN3-259ENST00000637551 GJD3Q8N144 294 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 ACBD6Q9BR61 282 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 PRKD2Q9BZL6 878 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 WDR27A2RRH5 827 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 SPDYE4A6NLX3 237 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 GABRDO14764 452 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 FGFR1OPO95684 399 aaKnown RBP19.63■□□□□ 0.73
CLN3-259ENST00000637551 C4BPAP04003 597 aaKnown RBP19.63■□□□□ 0.73
CLN3-259ENST00000637551 KRT19P08727 400 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 PCSK1P29120 753 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 ZP2Q05996 745 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 PAK1Q13153 545 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 PLD1Q13393 1074 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 TRPC3Q13507 836 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 TTI2Q6NXR4 508 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 RSPO2Q6UXX9 243 aaPredicted RBP19.63■□□□□ 0.73
CLN3-259ENST00000637551 FILIP1Q7Z7B0 1213 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 PALB2Q86YC2 1186 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 XYLT2Q9H1B5 865 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 AVENQ9NQS1 362 aaPredicted RBP19.63■□□□□ 0.73
CLN3-259ENST00000637551 DACH1Q9UI36 760 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 NR2E1Q9Y466 385 aa19.63■□□□□ 0.73
CLN3-259ENST00000637551 PMM2O15305 246 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ADAM12O43184 909 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 C8AP07357 584 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 P4HA1P13674 534 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 IL9P15248 144 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 PTMSP20962 102 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ELF1P32519 619 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 MARSP56192 900 aaKnown RBP19.62■□□□□ 0.73
CLN3-259ENST00000637551 MYL7Q01449 175 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 NFE2Q16621 373 aaPredicted RBP19.62■□□□□ 0.73
CLN3-259ENST00000637551 SGSM1Q2NKQ1 1148 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 TDRD10Q5VZ19 366 aaKnown RBP19.62■□□□□ 0.73
CLN3-259ENST00000637551 ANKRD40Q6AI12 368 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 SMYD5Q6GMV2 418 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 FRMD5Q7Z6J6 570 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 DCP1BQ8IZD4 617 aaKnown RBP19.62■□□□□ 0.73
CLN3-259ENST00000637551 PDCL2Q8N4E4 241 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 LEMD2Q8NC56 503 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 PLEKHO2Q8TD55 490 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ZNF516Q92618 1163 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ERCC4Q92889 916 aaPredicted RBP19.62■□□□□ 0.73
CLN3-259ENST00000637551 ZCWPW1Q9H0M4 648 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 KCNH6Q9H252 994 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 TMEM8AQ9HCN3 771 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ABCB6Q9NP58 842 aa19.62■□□□□ 0.73
CLN3-259ENST00000637551 ALADP13716 330 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 CPB1P15086 417 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 TSPY1Q01534 308 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 BIRC3Q13489 604 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 NCOA4Q13772 614 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 MAPRE1Q15691 268 aaKnown RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 PPM1LQ5SGD2 360 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 RARS2Q5T160 578 aaKnown RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 WSCD1Q658N2 575 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 LMBRD2Q68DH5 695 aaPredicted RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 SV2AQ7L0J3 742 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 SPPL2BQ8TCT7 592 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 ZNF707Q96C28 371 aaPredicted RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 CEP295NLQ96MC4 621 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 IMPG2Q9BZV3 1241 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 WDR6Q9NNW5 1121 aaKnown RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 ARMCX3Q9UH62 379 aaPredicted RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 RWDD2AQ9UIY3 292 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 L1RE1Q9UN81 338 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 SNX9Q9Y5X1 595 aa19.61■□□□□ 0.73
CLN3-259ENST00000637551 ZFP37Q9Y6Q3 630 aaPredicted RBP19.61■□□□□ 0.73
CLN3-259ENST00000637551 CCDC195A0A1B0GUA6 201 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 LOC730098B7Z3J9 87 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 PHACTR2O75167 634 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 ASS1P00966 412 aaKnown RBP19.6■□□□□ 0.73
CLN3-259ENST00000637551 CD44P16070 742 aaKnown RBP19.6■□□□□ 0.73
CLN3-259ENST00000637551 WARSP23381 471 aaKnown RBP19.6■□□□□ 0.73
CLN3-259ENST00000637551 TNNC1P63316 161 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 CAMK4Q16566 473 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 SOWAHAQ2M3V2 549 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 C1orf220Q5T0J3 134 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 KRT39Q6A163 491 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 ADGRF2Q8IZF7 708 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 SLC7A14Q8TBB6 771 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 NELFBQ8WX92 580 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 FUBP3Q96I24 572 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLN3-259ENST00000637551 ASB3Q9Y575 518 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 DOCK8Q8NF50 2099 aa19.6■□□□□ 0.73
CLN3-259ENST00000637551 N4BP1O75113 896 aaKnown RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 MICAL2O94851 1124 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 ERCC5P28715 1186 aaPredicted RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 TUFMP49411 452 aaKnown RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 PMS1P54277 932 aaKnown RBP19.59■□□□□ 0.73
CLN3-259ENST00000637551 CLUL1Q15846 466 aa19.59■□□□□ 0.73
CLN3-259ENST00000637551 ZNF699Q32M78 642 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms