RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 SDCBP2Q9H190 292 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 EPN1Q9Y6I3 576 aaPredicted RBP15.1■□□□□ 0.01
CLN3-242ENST00000635958 DDHD2O94830 711 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 LCA5LO95447 670 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 EIF4A3P38919 411 aaKnown RBP15.09■□□□□ 0.01
CLN3-242ENST00000635958 PTK2Q05397 1052 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 INCA1Q0VD86 236 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 DCLRE1AQ6PJP8 1040 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 CD300LGQ6UXG3 332 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 TOGARAM2Q6ZUX3 1019 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 ZNF571Q7Z3V5 609 aaPredicted RBP15.09■□□□□ 0.01
CLN3-242ENST00000635958 ZNF280BQ86YH2 543 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 COLGALT2Q8IYK4 626 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 C7orf61Q8IZ16 206 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 CCDC42Q96M95 316 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.09■□□□□ 0.01
CLN3-242ENST00000635958 PCDHB4Q9Y5E5 795 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 SNX9Q9Y5X1 595 aa15.09■□□□□ 0.01
CLN3-242ENST00000635958 CTAGE9A4FU28 777 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 CASTOR2A6NHX0 329 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 TACC1O75410 805 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 DGKIO75912 1065 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 NDUFA10O95299 355 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 ACRP10323 421 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 MCM3P25205 808 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 CYLC1P35663 651 aaPredicted RBP15.08■□□□□ 0.01
CLN3-242ENST00000635958 USP8P40818 1118 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 CDH8P55286 799 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 WDR5P61964 334 aaKnown RBP15.08■□□□□ 0.01
CLN3-242ENST00000635958 FPGSQ05932 587 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 MTF1Q14872 753 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 TMEM270Q6UE05 265 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 MSANTD4Q8NCY6 345 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 LRRN4CLQ8ND94 238 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 OLIG1Q8TAK6 271 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 EPS8L1Q8TE68 723 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 WDR24Q96S15 920 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 PAAF1Q9BRP4 392 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 MRPL9Q9BYD2 267 aaKnown RBP15.08■□□□□ 0.01
CLN3-242ENST00000635958 PARD6BQ9BYG5 372 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 ACBD3Q9H3P7 528 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 SMYD3Q9H7B4 428 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 NOCTQ9UK39 431 aaKnown RBP15.08■□□□□ 0.01
CLN3-242ENST00000635958 RAB21Q9UL25 225 aa15.08■□□□□ 0.01
CLN3-242ENST00000635958 EIF3CLB5ME19 914 aaKnown RBP15.08■□□□□ 0
CLN3-242ENST00000635958 TMEM189-UBE2V1I3L0A0 370 aa15.08■□□□□ 0
CLN3-242ENST00000635958 B4GALT3O60512 393 aa15.08■□□□□ 0
CLN3-242ENST00000635958 CILPO75339 1184 aa15.08■□□□□ 0
CLN3-242ENST00000635958 CLSTN1O94985 981 aa15.08■□□□□ 0
CLN3-242ENST00000635958 FGBP02675 491 aa15.08■□□□□ 0
CLN3-242ENST00000635958 AMHP03971 560 aa15.08■□□□□ 0
CLN3-242ENST00000635958 KRT5P13647 590 aa15.08■□□□□ 0
CLN3-242ENST00000635958 CYP11B1P15538 503 aa15.08■□□□□ 0
CLN3-242ENST00000635958 IGFBP6P24592 240 aaPredicted RBP15.08■□□□□ 0
CLN3-242ENST00000635958 SOWAHAQ2M3V2 549 aa15.08■□□□□ 0
CLN3-242ENST00000635958 TDRD12Q587J7 1177 aaKnown RBP15.08■□□□□ 0
CLN3-242ENST00000635958 SCARA5Q6ZMJ2 495 aa15.08■□□□□ 0
CLN3-242ENST00000635958 SLC47A2Q86VL8 602 aa15.08■□□□□ 0
CLN3-242ENST00000635958 TOP6BLQ8N6T0 577 aa15.08■□□□□ 0
CLN3-242ENST00000635958 RBBP8NLQ8NC74 664 aaPredicted RBP15.08■□□□□ 0
CLN3-242ENST00000635958 C3orf58Q8NDZ4 430 aa15.08■□□□□ 0
CLN3-242ENST00000635958 WHAMMQ8TF30 809 aa15.08■□□□□ 0
CLN3-242ENST00000635958 DDX1Q92499 740 aaKnown RBP15.08■□□□□ 0
CLN3-242ENST00000635958 MMS19Q96T76 1030 aa15.08■□□□□ 0
CLN3-242ENST00000635958 EIF3CQ99613 913 aaKnown RBP15.08■□□□□ 0
CLN3-242ENST00000635958 PCDH10Q9P2E7 1040 aa15.08■□□□□ 0
CLN3-242ENST00000635958 CACNG4Q9UBN1 327 aa15.08■□□□□ 0
CLN3-242ENST00000635958 BARX2Q9UMQ3 279 aaPredicted RBP15.08■□□□□ 0
CLN3-242ENST00000635958 GATMP50440 423 aa15.07■□□□□ 0
CLN3-242ENST00000635958 SMC1AQ14683 1233 aaKnown RBP15.07■□□□□ 0
CLN3-242ENST00000635958 HDXQ7Z353 690 aa15.07■□□□□ 0
CLN3-242ENST00000635958 ZNF677Q86XU0 584 aa15.07■□□□□ 0
CLN3-242ENST00000635958 GPIHBP1Q8IV16 184 aa15.07■□□□□ 0
CLN3-242ENST00000635958 SLC30A5Q8TAD4 765 aa15.07■□□□□ 0
CLN3-242ENST00000635958 EXOC4Q96A65 974 aa15.07■□□□□ 0
CLN3-242ENST00000635958 ZNF689Q96CS4 500 aaPredicted RBP15.07■□□□□ 0
CLN3-242ENST00000635958 AGPAT1Q99943 283 aa15.07■□□□□ 0
CLN3-242ENST00000635958 NRDE2Q9H7Z3 1164 aa15.07■□□□□ 0
CLN3-242ENST00000635958 FNDC1Q4ZHG4 1894 aaPredicted RBP15.07■□□□□ 0
CLN3-242ENST00000635958 B3GAT3O94766 335 aa15.06■□□□□ 0
CLN3-242ENST00000635958 PAEPP09466 180 aa15.06■□□□□ 0
CLN3-242ENST00000635958 CD58P19256 250 aa15.06■□□□□ 0
CLN3-242ENST00000635958 RAP1GAPP47736 663 aa15.06■□□□□ 0
CLN3-242ENST00000635958 KIF11P52732 1056 aa15.06■□□□□ 0
CLN3-242ENST00000635958 RNASELQ05823 741 aaKnown RBP15.06■□□□□ 0
CLN3-242ENST00000635958 SLC18A3Q16572 532 aa15.06■□□□□ 0
CLN3-242ENST00000635958 TMEM240Q5SV17 173 aa15.06■□□□□ 0
CLN3-242ENST00000635958 ZNF662Q6ZS27 426 aa15.06■□□□□ 0
CLN3-242ENST00000635958 ZNF365Q70YC5 407 aa15.06■□□□□ 0
CLN3-242ENST00000635958 NOP9Q86U38 636 aaKnown RBP15.06■□□□□ 0
CLN3-242ENST00000635958 UNC93AQ86WB7 457 aa15.06■□□□□ 0
CLN3-242ENST00000635958 APPL2Q8NEU8 664 aa15.06■□□□□ 0
CLN3-242ENST00000635958 SENP8Q96LD8 212 aa15.06■□□□□ 0
CLN3-242ENST00000635958 FAM193BQ96PV7 902 aaPredicted RBP15.06■□□□□ 0
CLN3-242ENST00000635958 TMEM175Q9BSA9 504 aa15.06■□□□□ 0
CLN3-242ENST00000635958 RC3H2Q9HBD1 1191 aaKnown RBP15.06■□□□□ 0
CLN3-242ENST00000635958 ADAMTS1Q9UHI8 967 aa15.06■□□□□ 0
CLN3-242ENST00000635958 L1RE1Q9UN81 338 aa15.06■□□□□ 0
CLN3-242ENST00000635958 A0A087X0T9 212 aa15.06■□□□□ 0
CLN3-242ENST00000635958 TBKBP1A7MCY6 615 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms