RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 EPSTI1Q96J88 318 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 PGLYRP2Q96PD5 576 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 HINFPQ9BQA5 517 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 DPP3Q9NY33 737 aa12.88□□□□□ -0.35
UPF3B-204ENST00000619445 NUP210Q8TEM1 1887 aaPredicted RBP12.88□□□□□ -0.35
UPF3B-204ENST00000619445 GPR179Q6PRD1 2367 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 SOBPA7XYQ1 873 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 HEPACAM2A8MVW5 462 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 CYB561D2O14569 222 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 MOSPD3O75425 235 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 PPP1R37O75864 691 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 SDHBP21912 280 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 GARTP22102 1010 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 CCR3P51677 355 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 GUCY2FP51841 1108 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 PLCB2Q00722 1185 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 CSTF1Q05048 431 aaKnown RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 FCHO2Q0JRZ9 810 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 LRRC32Q14392 662 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 GRM2Q14416 872 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TEAD2Q15562 447 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TAF12Q16514 161 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 NFE2Q16621 373 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 ARHGAP29Q52LW3 1261 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 ZC2HC1CQ53FD0 456 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 L1TD1Q5T7N2 865 aaKnown RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 DNAJB7Q7Z6W7 309 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 SFR1Q86XK3 245 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TMC8Q8IU68 726 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 MAML2Q8IZL2 1156 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 ZBTB44Q8NCP5 570 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 SPATA18Q8TC71 538 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 LRRC15Q8TF66 581 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 FAM3CQ92520 227 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 LRRC3Q9BY71 257 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 ZCWPW1Q9H0M4 648 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 CHRDQ9H2X0 955 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TMEM206Q9H813 350 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 PRMT8Q9NR22 394 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 FBXO2Q9UK22 296 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 MTF2Q9Y483 593 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-204ENST00000619445 PIAS3Q9Y6X2 628 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TICRRQ7Z2Z1 1910 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 TSC2P49815 1807 aa12.87□□□□□ -0.35
UPF3B-204ENST00000619445 A0A1W2PRU2 124 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 KPNA7A9QM74 516 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 ANKRD63C9JTQ0 380 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 LRRN2O75325 713 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 OR4Q2P0C623 313 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 SYT1P21579 422 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 CD72P21854 359 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 STAT6P42226 847 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 TSPY1Q01534 308 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 SLC39A14Q15043 492 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 SLC39A12Q504Y0 691 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 DYMQ7RTS9 669 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 SYCP3Q8IZU3 236 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 TMEM86AQ8N2M4 240 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 ATAD1Q8NBU5 361 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 FAM200AQ8TCP9 573 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 NELL1Q92832 810 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 ZSWIM3Q96MP5 696 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 PYM1Q9BRP8 204 aaKnown RBP12.86□□□□□ -0.35
UPF3B-204ENST00000619445 STRA6Q9BX79 667 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 DNAJC25Q9H1X3 360 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 THG1LQ9NWX6 298 aaKnown RBP12.86□□□□□ -0.35
UPF3B-204ENST00000619445 R3HCC1Q9Y3T6 440 aaKnown RBP12.86□□□□□ -0.35
UPF3B-204ENST00000619445 CLIC4Q9Y696 253 aa12.86□□□□□ -0.35
UPF3B-204ENST00000619445 MYMKA6NI61 221 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 PPEF2O14830 753 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 GCNT3O95395 438 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 VNN2O95498 520 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 IDEP14735 1019 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 DDX6P26196 483 aaKnown RBP eCLIP12.85□□□□□ -0.35
UPF3B-204ENST00000619445 GABRR2P28476 465 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 VIPR2P41587 438 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 RESTQ13127 1097 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 MGAT5BQ3V5L5 792 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 DGKKQ5KSL6 1271 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 RALGPS2Q86X27 583 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-204ENST00000619445 ARID3BQ8IVW6 561 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-204ENST00000619445 BRSK2Q8IWQ3 736 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 CCDC65Q8IXS2 484 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 LRRC52Q8N7C0 313 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 SUMF1Q8NBK3 374 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 DNAJC19Q96DA6 116 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 SEPT5Q99719 369 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-204ENST00000619445 EPC1Q9H2F5 836 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 ATXN3LQ9H3M9 355 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 CUEDC2Q9H467 287 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 TASP1Q9H6P5 420 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 ITGA11Q9UKX5 1188 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 NDRG2Q9UN36 371 aaKnown RBP12.85□□□□□ -0.35
UPF3B-204ENST00000619445 SLC27A5Q9Y2P5 690 aa12.85□□□□□ -0.35
UPF3B-204ENST00000619445 COL4A2P08572 1712 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 FRMD3A2A2Y4 597 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 ARNTLO00327 626 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 HUS1O60921 280 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 ATXN8OSP0DMR3 200 aa12.84□□□□□ -0.35
UPF3B-204ENST00000619445 GJA1P17302 382 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms