RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MARCH6O60337 910 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 HLA-DOAP06340 250 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 CHRNB1P11230 501 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 EEF2P13639 858 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 ZNF12P17014 697 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 PRKACBP22694 351 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ACADSBP45954 432 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ADCY7P51828 1080 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 TAF1BQ53T94 588 aaPredicted RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 KRT25Q7Z3Z0 450 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 ADSSL1Q8N142 457 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 OR6Y1Q8NGX8 325 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 TBC1D23Q9NUY8 699 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 TRNAU1APQ9NX07 287 aaKnown RBP10.76□□□□□ -0.69
VPS39-214ENST00000614932 GIN1Q9NXP7 522 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 DNAJB4Q9UDY4 337 aa10.76□□□□□ -0.69
VPS39-214ENST00000614932 CDK5RAP2Q96SN8 1893 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ZWINTO95229 277 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 TAC1P20366 129 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 PDE4DQ08499 809 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 CALCRLQ16602 461 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 SIGIRRQ6IA17 410 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 BORAQ6PGQ7 559 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 DCDC5Q6ZRR9 648 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 SH3BP5LQ7L8J4 393 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 FASTKD5Q7L8L6 764 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 PDSS2Q86YH6 399 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ERI1Q8IV48 349 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 ZFRQ96KR1 1074 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 NUP85Q9BW27 656 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ZDHHC18Q9NUE0 388 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 C6orf203Q9P0P8 240 aaPredicted RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 ZFP69BQ9UJL9 534 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 AK5Q9Y6K8 562 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 CFAP69A5D8W1 941 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 SOBPA7XYQ1 873 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 PIK3CDO00329 1044 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 PFDN6O15212 129 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 EDIL3O43854 480 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ZNF543Q08ER8 600 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 STK4Q13043 487 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 PDK3Q15120 406 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 TMTC4Q5T4D3 741 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 MAP3K21Q5TCX8 1036 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 NIPAL1Q6NVV3 410 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 PPP1R21Q6ZMI0 780 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ANKMY2Q8IV38 441 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 RHOT2Q8IXI1 618 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 VPS52Q8N1B4 723 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 METTL25Q8N6Q8 603 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 DAGLBQ8NCG7 672 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 OR7G1Q8NGA0 311 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 U2AF1L4Q8WU68 220 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 PTCD2Q8WV60 388 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 TRIM47Q96LD4 638 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ERGIC2Q96RQ1 377 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 CELF4Q9BZC1 486 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 OSBPL6Q9BZF3 934 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ROPN1BQ9BZX4 212 aaPredicted RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 TRIM31Q9BZY9 425 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 EHD1Q9H4M9 534 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 RIOX1Q9H6W3 641 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 ROPN1Q9HAT0 212 aaPredicted RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 MRGBPQ9NV56 204 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 RBMX2Q9Y388 322 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 NOC2LQ9Y3T9 749 aaKnown RBP10.75□□□□□ -0.69
VPS39-214ENST00000614932 SLC30A1Q9Y6M5 507 aa10.75□□□□□ -0.69
VPS39-214ENST00000614932 TCP10L2B9ZVM9 353 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 F8W8V4 182 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 GYG2O15488 501 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 GH1P01241 217 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 FUCA1P04066 466 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ATP5DP30049 168 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 AP2B1P63010 937 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 JAG1P78504 1218 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 CACNB1Q02641 598 aaPredicted RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 MOGSQ13724 837 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 PHKG1Q16816 387 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 UGT2A3Q6UWM9 527 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 SLC30A10Q6XR72 485 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ARHGEF18Q6ZSZ5 1173 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 SCYL3Q8IZE3 742 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 CTRCQ99895 268 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 TUBB6Q9BUF5 446 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ARMC7Q9H6L4 198 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 FKBP14Q9NWM8 211 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 FAM198AQ9UFP1 575 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 TLL2Q9Y6L7 1015 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 KLRC4O43908 158 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 RAD17O75943 681 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 TFPTP0C1Z6 253 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ESRRAP11474 423 aaPredicted RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 VCLP18206 1134 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 PHKA2P46019 1235 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ENTPD1P49961 510 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 VCPP55072 806 aaKnown RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 RPS3AP61247 264 aaKnown RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 RPL26P61254 145 aaKnown RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 STRN3Q13033 797 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 LRRC41Q15345 812 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms