RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 TMEM132DQ14C87 1099 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 VEPH1Q14D04 833 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 C8orf34Q49A92 452 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 C9orf57Q5W0N0 161 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 LARP1BQ659C4 914 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 TMC8Q8IU68 726 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 ARID3BQ8IVW6 561 aaPredicted RBP19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 TMEM130Q8N3G9 435 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 KRI1Q8N9T8 703 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 RASSF8Q8NHQ8 419 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 HVCN1Q96D96 273 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 CCSER1Q9C0I3 900 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 PARD6AQ9NPB6 346 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 USP18Q9UMW8 372 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 STYXL1Q9Y6J8 313 aa19.3■□□□□ 0.68
SHKBP1-227ENST00000602011 A0A1W2PRU2 124 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 ANO9A1A5B4 782 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 DCDC2BA2VCK2 349 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 MTMR11A4FU01 709 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 FOXD2O60548 495 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 PAPSS2O95340 614 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 CDC25CP30307 473 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 KPNA1P52294 538 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 CACNB1Q02641 598 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 RAD54LQ92698 747 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 PGLYRP2Q96PD5 576 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 DNAJC25Q9H1X3 360 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 ATXN3LQ9H3M9 355 aa19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 THG1LQ9NWX6 298 aaKnown RBP19.29■□□□□ 0.68
SHKBP1-227ENST00000602011 VNN2O95498 520 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 TDGF1P13385 188 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 GJA1P17302 382 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 TGM1P22735 817 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 CCNE1P24864 410 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 ADALQ6DHV7 355 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 LAIR1Q6GTX8 287 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 JADE1Q6IE81 842 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 ATAD1Q8NBU5 361 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 FAM200AQ8TCP9 573 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 SPPL2BQ8TCT7 592 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 LARP4BQ92615 738 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 FAM212AQ96EL1 285 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 GCNAQ96QF7 691 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 TASP1Q9H6P5 420 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 BLOC1S4Q9NUP1 217 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 SEL1LQ9UBV2 794 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 SLC27A5Q9Y2P5 690 aa19.28■□□□□ 0.68
SHKBP1-227ENST00000602011 NCANO14594 1321 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 MYBPHLA2RUH7 354 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 IL18RAPO95256 599 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 OR4Q2P0C623 313 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 HOXA6P31267 233 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 TAF6P49848 677 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 DHX8Q14562 1220 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 TAF12Q16514 161 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 DCP1BQ8IZD4 617 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 ZCWPW1Q9H0M4 648 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 ZHX3Q9H4I2 956 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 CCDC39Q9UFE4 941 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 AGO2Q9UKV8 859 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 EXOC7Q9UPT5 735 aa19.27■□□□□ 0.68
SHKBP1-227ENST00000602011 ACACBO00763 2458 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 CYB561D2O14569 222 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 RETP07949 1114 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 PLCG1P19174 1290 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 PDCP20941 246 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 DDX6P26196 483 aaKnown RBP eCLIP19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 GABRR2P28476 465 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 PNPLA4P41247 253 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 AMPD2Q01433 879 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 MCM6Q14566 821 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 GAREM2Q75VX8 874 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 ZNF720Q7Z2F6 126 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 FIZ1Q96SL8 496 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 RTKNQ9BST9 563 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 CRISPLD1Q9H336 500 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 DPP3Q9NY33 737 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 STK17AQ9UEE5 414 aa19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 CDV3Q9UKY7 258 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-227ENST00000602011 SPEM2Q0P670 501 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 MGAT5BQ3V5L5 792 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 SV2CQ496J9 727 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 GPR158Q5T848 1215 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 BPIFB1Q8TDL5 484 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 EXOC4Q96A65 974 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 TICRRQ7Z2Z1 1910 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 COL4A2P08572 1712 aa19.25■□□□□ 0.67
SHKBP1-227ENST00000602011 MYH11P35749 1972 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 SPECC1L-ADORA2AF8WAN1 911 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 LDHAP00338 332 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 NFICP08651 508 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 GAP43P17677 238 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 NMT1P30419 496 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 ACOT2P49753 483 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 GUCY2FP51841 1108 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 KARSQ15046 597 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 SF3A1Q15459 793 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 NFE2Q16621 373 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 SLC39A12Q504Y0 691 aa19.24■□□□□ 0.67
SHKBP1-227ENST00000602011 SLC39A4Q6P5W5 647 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms